Gene Plim_0426 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_0426 
Symbol 
ID9137085 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand
Start bp530461 
End bp532194 
Gene Length1734 bp 
Protein Length577 aa 
Translation table11 
GC content52% 
IMG OID 
Producttype II secretion system protein E 
Protein accessionYP_003628475 
Protein GI296120697 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0285266 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGGTT TACTTCAACT CAATAAACCG CGACTTGGCG ATCTGCTTGT CCAGAAGGGA 
TATCTCAGTG CAGAGCATCT GGATGAAGCT TTAGCCCAGC AGCACAGCAG TGGGGGGATG
CAACTGCTGG GCGAGATTGT CGTCGCTCAA GGCTATTGCT CTGAAGACCA GGTACTCGAA
TGCGTCGCTG ATGATTGCGG CATTCCTTAC ATCCGTCTCG ACAGCCGACT GTTTGATCCA
CGCGCTGTCG AGTTGCTGCC TCGGGAGTTT CTCGAAAAGA ACTGCATTCT GCCGTTGTTC
AAAGTTCGCC AGACATTAAC TGTCGCGACG GCAGAACCCT CGAACATTTT TATCATCGAT
CAATTGCGGC AGATCTCGGG CTGCGACATT CAACTGGCAG TAGCGAGCAG TCGAGATATA
CGGCGGACAT TCCAGATGTA CCTGCCGAAC TCCAAAGTGT TTGTGATCGA TGACATTATC
GATGACGTGA ACACCGAAGC TGTCGAATTA ATCGAGGAAT CGATCGACGA TATTTCGTTT
GATGTTGATC TTGCCGGTCA GAGCCCGATT ATCAAGCTGG TGAATTATGT GATCTTCAGC
GCGGTGCGGG ATGGTGCCAG CGATGTGCAT ATCGAACCGA CTGAACGCCA GATTCGTGTC
CGTTATCGCG TGGATGGAGC GTTGCATCAG GCACTCGAAT TGCCTTTACA TATTGCTCCA
GCGATTGCTT CGCGCATCAA GATTATGGCG ACCCTCGACA TCAGTGAGCG TCGCCTGCCT
CAGGATGGAC GCATTCATGT TTTGATGGAA GGGAGACCGA TCGACCTGCG GGTGAGCACC
TTGCCATTGC CGCATGGCGA GAAGGTGGTC ATTCGAATTC TCGACAGTCA GAAGATCAAC
CTGACACTTT CTCAATTGGG ATTCAGTGCC GAGATTCTGG AGAAATTTAT TGCCCAGATT
CATCATCCCA ATGGAATTGC CCTGGTGACG GGGCCGACGG GAAGTGGCAA AAGTACGACG
CTCTACTCGG CCATCAATGC CGTGACTTCG ATGGAAAAGA ACGTCTGCAC TGTGGAAGAC
CCGGTGGAAT TTCAGTTGCC GATGGTCAAT CAGTTTCAAG TGAATGAAAA AATCGGGCTG
TCGTTCGCGG CAGTGCTCAG GAGCCTGCTC AGGCAGGATC CGGATATCAT CATGGTGGGT
GAAATCCGCG ATAATGAGAC GGCCCGCATC GGGATTCAGG CAGCTTTGAC GGGTCATCTG
GTATTCAGCA CGCTGCATAC GAACGATGCC TGCTCCGCGG TAACACGTCT GATCAACATG
GGTATCGAAA GCTACCTGCT GGCTGCCAGC CTGAACATGG TGCTGTCACA GCGACTGTGC
CGGCGCATCT GTCCGAAGTG CAAGCAGTCA TATGAACCAC CCAAAGCCAT GCAACTGGCC
ATGGGAAAAA TGGGGATGGA AGCTAAGGAA TTCTTCCGGG GAGTGGGGTG CAAGAAGTGT
CGGAACACGG GATTTTCGGG ACGAGTCGCG ATTCATGAGC TGCTGGTGGT CGACGACGGC
ATGCGGGATC TGATTGCTCA ATCGCCAGCA CTGGGAGAGC TGAAAAGCTA CGCCCAGAAG
CAGGGCATGA TGCCACTTCG TTTTGATGGA TTCCGCAAAG TTCGCGAAGG TTTAACGACG
ATTGAAGAAG TCTTTCAGGC GAGTGATGAA GGCTGGTTAC CGCTGAGAAG CTAA
 
Protein sequence
MAGLLQLNKP RLGDLLVQKG YLSAEHLDEA LAQQHSSGGM QLLGEIVVAQ GYCSEDQVLE 
CVADDCGIPY IRLDSRLFDP RAVELLPREF LEKNCILPLF KVRQTLTVAT AEPSNIFIID
QLRQISGCDI QLAVASSRDI RRTFQMYLPN SKVFVIDDII DDVNTEAVEL IEESIDDISF
DVDLAGQSPI IKLVNYVIFS AVRDGASDVH IEPTERQIRV RYRVDGALHQ ALELPLHIAP
AIASRIKIMA TLDISERRLP QDGRIHVLME GRPIDLRVST LPLPHGEKVV IRILDSQKIN
LTLSQLGFSA EILEKFIAQI HHPNGIALVT GPTGSGKSTT LYSAINAVTS MEKNVCTVED
PVEFQLPMVN QFQVNEKIGL SFAAVLRSLL RQDPDIIMVG EIRDNETARI GIQAALTGHL
VFSTLHTNDA CSAVTRLINM GIESYLLAAS LNMVLSQRLC RRICPKCKQS YEPPKAMQLA
MGKMGMEAKE FFRGVGCKKC RNTGFSGRVA IHELLVVDDG MRDLIAQSPA LGELKSYAQK
QGMMPLRFDG FRKVREGLTT IEEVFQASDE GWLPLRS