Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plim_0426 |
Symbol | |
ID | 9137085 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Planctomyces limnophilus DSM 3776 |
Kingdom | Bacteria |
Replicon accession | NC_014148 |
Strand | - |
Start bp | 530461 |
End bp | 532194 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | |
Product | type II secretion system protein E |
Protein accession | YP_003628475 |
Protein GI | 296120697 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0285266 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGGTT TACTTCAACT CAATAAACCG CGACTTGGCG ATCTGCTTGT CCAGAAGGGA TATCTCAGTG CAGAGCATCT GGATGAAGCT TTAGCCCAGC AGCACAGCAG TGGGGGGATG CAACTGCTGG GCGAGATTGT CGTCGCTCAA GGCTATTGCT CTGAAGACCA GGTACTCGAA TGCGTCGCTG ATGATTGCGG CATTCCTTAC ATCCGTCTCG ACAGCCGACT GTTTGATCCA CGCGCTGTCG AGTTGCTGCC TCGGGAGTTT CTCGAAAAGA ACTGCATTCT GCCGTTGTTC AAAGTTCGCC AGACATTAAC TGTCGCGACG GCAGAACCCT CGAACATTTT TATCATCGAT CAATTGCGGC AGATCTCGGG CTGCGACATT CAACTGGCAG TAGCGAGCAG TCGAGATATA CGGCGGACAT TCCAGATGTA CCTGCCGAAC TCCAAAGTGT TTGTGATCGA TGACATTATC GATGACGTGA ACACCGAAGC TGTCGAATTA ATCGAGGAAT CGATCGACGA TATTTCGTTT GATGTTGATC TTGCCGGTCA GAGCCCGATT ATCAAGCTGG TGAATTATGT GATCTTCAGC GCGGTGCGGG ATGGTGCCAG CGATGTGCAT ATCGAACCGA CTGAACGCCA GATTCGTGTC CGTTATCGCG TGGATGGAGC GTTGCATCAG GCACTCGAAT TGCCTTTACA TATTGCTCCA GCGATTGCTT CGCGCATCAA GATTATGGCG ACCCTCGACA TCAGTGAGCG TCGCCTGCCT CAGGATGGAC GCATTCATGT TTTGATGGAA GGGAGACCGA TCGACCTGCG GGTGAGCACC TTGCCATTGC CGCATGGCGA GAAGGTGGTC ATTCGAATTC TCGACAGTCA GAAGATCAAC CTGACACTTT CTCAATTGGG ATTCAGTGCC GAGATTCTGG AGAAATTTAT TGCCCAGATT CATCATCCCA ATGGAATTGC CCTGGTGACG GGGCCGACGG GAAGTGGCAA AAGTACGACG CTCTACTCGG CCATCAATGC CGTGACTTCG ATGGAAAAGA ACGTCTGCAC TGTGGAAGAC CCGGTGGAAT TTCAGTTGCC GATGGTCAAT CAGTTTCAAG TGAATGAAAA AATCGGGCTG TCGTTCGCGG CAGTGCTCAG GAGCCTGCTC AGGCAGGATC CGGATATCAT CATGGTGGGT GAAATCCGCG ATAATGAGAC GGCCCGCATC GGGATTCAGG CAGCTTTGAC GGGTCATCTG GTATTCAGCA CGCTGCATAC GAACGATGCC TGCTCCGCGG TAACACGTCT GATCAACATG GGTATCGAAA GCTACCTGCT GGCTGCCAGC CTGAACATGG TGCTGTCACA GCGACTGTGC CGGCGCATCT GTCCGAAGTG CAAGCAGTCA TATGAACCAC CCAAAGCCAT GCAACTGGCC ATGGGAAAAA TGGGGATGGA AGCTAAGGAA TTCTTCCGGG GAGTGGGGTG CAAGAAGTGT CGGAACACGG GATTTTCGGG ACGAGTCGCG ATTCATGAGC TGCTGGTGGT CGACGACGGC ATGCGGGATC TGATTGCTCA ATCGCCAGCA CTGGGAGAGC TGAAAAGCTA CGCCCAGAAG CAGGGCATGA TGCCACTTCG TTTTGATGGA TTCCGCAAAG TTCGCGAAGG TTTAACGACG ATTGAAGAAG TCTTTCAGGC GAGTGATGAA GGCTGGTTAC CGCTGAGAAG CTAA
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Protein sequence | MAGLLQLNKP RLGDLLVQKG YLSAEHLDEA LAQQHSSGGM QLLGEIVVAQ GYCSEDQVLE CVADDCGIPY IRLDSRLFDP RAVELLPREF LEKNCILPLF KVRQTLTVAT AEPSNIFIID QLRQISGCDI QLAVASSRDI RRTFQMYLPN SKVFVIDDII DDVNTEAVEL IEESIDDISF DVDLAGQSPI IKLVNYVIFS AVRDGASDVH IEPTERQIRV RYRVDGALHQ ALELPLHIAP AIASRIKIMA TLDISERRLP QDGRIHVLME GRPIDLRVST LPLPHGEKVV IRILDSQKIN LTLSQLGFSA EILEKFIAQI HHPNGIALVT GPTGSGKSTT LYSAINAVTS MEKNVCTVED PVEFQLPMVN QFQVNEKIGL SFAAVLRSLL RQDPDIIMVG EIRDNETARI GIQAALTGHL VFSTLHTNDA CSAVTRLINM GIESYLLAAS LNMVLSQRLC RRICPKCKQS YEPPKAMQLA MGKMGMEAKE FFRGVGCKKC RNTGFSGRVA IHELLVVDDG MRDLIAQSPA LGELKSYAQK QGMMPLRFDG FRKVREGLTT IEEVFQASDE GWLPLRS
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