Gene Plim_0089 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_0089 
Symbol 
ID9136743 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand+ 
Start bp121809 
End bp122363 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content54% 
IMG OID 
ProductNIPSNAP family containing protein 
Protein accessionYP_003628141 
Protein GI296120363 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.348759 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCGAC TCATCTCTCA CGCGCCGACA CCTAACGCTT CCAAGTCCGA TAGCAATCAT 
GCATCGGCTC AGGATGACCG TACGATTCAG GCCTCGCAGT CATCACATAC GAGCCCTTCC 
ACTTTCGGGA AGACCCTGTT GCTGTGGGCC TTGGCCTCAC TGATCGGTGG CGGGCTGGGA 
TATGGTTACA CATTAAAAAT TTCGCAGGCC GAAGCGAACC GGGCAGAGAC GAAAAAGCTC 
TATGAACTGC GGACTTACAC GGCACTACCC GGGCGGTTGG ATGCGCTGAA CAAGCGCTTT 
CGCGATCACA CCACTCAGCT TTTCGCTAAG CATGGGATGA CGAATGTGAT CTATCTCACA 
CCGGCCAATG GTGACAATAA ACTCATTTAT CTGATTGCCC ATGAGAACGA AGCGGCTGCG 
GCAGCCTCAT GGAAGGCCTT TCGCGAAGAT CCTGCGTGGA AAGCGGCACG CGAAGCCTCT 
GAGGCAGACG GCAAGATTGT CGAGAAGGTG GAATCGGTTT ATCTGAATGC CACCGATTAT 
TCTCCCATGA AATAG
 
Protein sequence
MSRLISHAPT PNASKSDSNH ASAQDDRTIQ ASQSSHTSPS TFGKTLLLWA LASLIGGGLG 
YGYTLKISQA EANRAETKKL YELRTYTALP GRLDALNKRF RDHTTQLFAK HGMTNVIYLT 
PANGDNKLIY LIAHENEAAA AASWKAFRED PAWKAAREAS EADGKIVEKV ESVYLNATDY 
SPMK