| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_6409 |
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| Symbol | |
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| ID | 8887635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stackebrandtia nassauensis DSM 44728 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013947 |
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| Strand | - |
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| Start bp | 6761425 |
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| End bp | 6763182 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_003515118 |
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| Protein GI | 291303840 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTAAGG AAAGTCAGAA GTCCACAAGC GATCTAGGGA AGGAGGGAAT GAAAGTCGCG
TCGTCGCGCC CCAGGACCGA CTGGGTGGTG TTCGGCGTAA CCGCTGTACT GACCGCCGCG
TTCATCGCAT GGGGATTCAT CAATACAACG GGTTTGCAGA CGGCCTCGTC CAATATGCTT
GGCGAGATCA TGGACAAGGG TGGCTGGGCA TTCGTGCTCG CGTCGTCCGG ATTCGTGGTC
TTCGCACTGT GGCTGGCGTT CAGCCGTTAC GGCAAGATCA CCCTCGGCAA AGAGGGCGAG
GAGCCGGAGT TCAAGACGGT CTCGTGGATC GCGATGATGT TCAGCGCCGG TATGGGCATC
GGCTTGATGT TCTACGGCGT CAACGAACCG CTGAGCCACT TCACCGCGCC GCCTCCCGGT
ACGCACGCGG TCGACGCCGC GGCGCCGGAG CGCATGGAGA CCGCGATGGC GACCACGTTG
TTCCACTGGA CCCTGCACCC GTGGGCCATC TACGCCGTCG TCGGTCTGGC CATCGCCTAC
AGCTGCTACC GCCGTGGCCG TCGCCAGACC ATCAGTGCCA CCTTCACCCC GTTGATCGGT
GAACGGCACG CCAACGGTGG GGTCGGCAAG GTCATCGACA TCCTGGCGAT CTTCGCGACC
CTGTTCGGCT CGGCCGCCTC GCTGGGCCTG GGCGCCCTGC AGATCTCCAG TGGCCTGAGC
GAACTGGGCT GGACCAACGG TGGCCTCACC AACGGCGTCC TGCTGATGAT CATCGGCGTG
CTGACCCTGG CCTTCGTGGC CTCGGCCGTC TCCGGTGTCG AGAAGGGCAT CCAGTGGCTG
TCCAACATCA ACATGGTGTT GGCGGGTCTA TTGGTCGCGT TCCTGTTCGT CTTCGGCCCG
ACCAAGTACA TCCTCAACGT GCTGCCGACC TCGATGGCCT CTTACCTCGA GGAACTGCCG
CAGATGATGG GTCGTACCGG CGCCACCGGT GGCAGCGACG TCGCCACCTG GCTCGGCGGC
TGGTCGGTGT TCTACTGGGC GTGGTGGATC TCGTGGACGC CCTTCGTGGG CATGTTCATC
GCCCGGATCA GCCGGGGCCG CACCATCCGC CAGTTCGTCG GCGGGGTGCT GCTGGTGCCC
AGCGTCGTGA GCCTCATCTG GTTCGCGATC TTCGGTGGCA CCGCGATCCA CGACGAGCAG
CACGGTGCCG GGCTGACCAA GGAGGCGACC GCCGAAGGCC AGCTGTTCGC GGTGCTGCGC
GAGTACCCGA TCCCGTCGAT CACCGCGCTC ATCGTGGTGA TCCTGGTGGC GATCTTCTTC
GTCTCCGGTG CCGACGCCGC TTCGATCGTC ATGGGGACGT TGTCGCAGCG GGGCACGATG
GAGCCGTCCA AGGTCGTGGT CATCGTGTGG GGTGTCGCGA CCGGTGCGGT CGCGGGCATC
ATGCTGCTGA TCGGCAGCGG CGAGATAACC GAGGACGGCA AGAACCCGGC CTTGGAGGGG
TTGAAGAACC TCACCATTCT GGCCGCGGTG CCGTTCACGG TCGTGATGAT CCTGCTGTGC
ATCGCGCTCA CCAAGGATCT GCGCGAGGAC CGGCTCATCG TCCGCGGCGA GCAGGGCGAG
GAGGCGGTCA GCACGGCCGT CGACATCGCG CACGAGAAGT ACGACGGCGA GTTCGAGTTC
AAGATCGGTC CGGCGGACAA CGGTGACACC GCCCCGGCCG ACGACGACAA GGCGGGCAGC
GGCTCCAAGA AGAGCTGA
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| Protein sequence | MPKESQKSTS DLGKEGMKVA SSRPRTDWVV FGVTAVLTAA FIAWGFINTT GLQTASSNML
GEIMDKGGWA FVLASSGFVV FALWLAFSRY GKITLGKEGE EPEFKTVSWI AMMFSAGMGI
GLMFYGVNEP LSHFTAPPPG THAVDAAAPE RMETAMATTL FHWTLHPWAI YAVVGLAIAY
SCYRRGRRQT ISATFTPLIG ERHANGGVGK VIDILAIFAT LFGSAASLGL GALQISSGLS
ELGWTNGGLT NGVLLMIIGV LTLAFVASAV SGVEKGIQWL SNINMVLAGL LVAFLFVFGP
TKYILNVLPT SMASYLEELP QMMGRTGATG GSDVATWLGG WSVFYWAWWI SWTPFVGMFI
ARISRGRTIR QFVGGVLLVP SVVSLIWFAI FGGTAIHDEQ HGAGLTKEAT AEGQLFAVLR
EYPIPSITAL IVVILVAIFF VSGADAASIV MGTLSQRGTM EPSKVVVIVW GVATGAVAGI
MLLIGSGEIT EDGKNPALEG LKNLTILAAV PFTVVMILLC IALTKDLRED RLIVRGEQGE
EAVSTAVDIA HEKYDGEFEF KIGPADNGDT APADDDKAGS GSKKS
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