Gene Snas_5939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_5939 
Symbol 
ID8887160 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp6300533 
End bp6301189 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content70% 
IMG OID 
Producttwo component transcriptional regulator, winged helix family 
Protein accessionYP_003514659 
Protein GI291303381 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGTAC TGGTGGTCGA GGACGAGCCG ATGCTCGCCG AGGCGATCGC GGAGTGGCTG 
CGGGCCGAGC CGCACGCGGT CGACATCGCG TTGGACGGCG CCGCCGCGCT GGAACGGGTC
TGGGTCAACG ACTACGACGT CCTGGTGCTG GATCGCGACA TTCCCCGGGT GCACGGCGAC
GAGGTGTGCC GCCAGGTCGT CGACTCCGAG TCCGAGGTCC GGATCCTCAT GCTGACCGCC
GCCGCCGAGA TCGGTGACCG GGTCGACGGC CTGTCGCTGG GGGCCGACGA CTACCTGACC
AAACCGTTCG CGTTCCCCGA ACTGGCGGCC CGGGTGCACG CCCTGGGCCG CCGCTCCCGC
CCGGCCGCGC CGCCGGTGCT GCGCCGGGCC GGGATAACCG TCGACACGGC CCGCCGCCAG
GTGTTCCGGG ACGGCCGCTA CATCCCACTG TCCAAGAAGG AGTTCGCGGT GCTGACGGAG
TTGGTGCGCG GTGACGGCGA GGTCGTCTCG GCCGAACAGC TGTTGGAGAA GGCATGGGAC
GAGCACGTCG ACCCGTTCAC GGGCGTGGTG CGGCTGACCA TCCTCAAGGT ACGGCGCAAG
CTCGGTGAGC CTCAGATCAT CGAGACGGTT CCGGGAGTGG GGTACCGGAT CCCATGA
 
Protein sequence
MRVLVVEDEP MLAEAIAEWL RAEPHAVDIA LDGAAALERV WVNDYDVLVL DRDIPRVHGD 
EVCRQVVDSE SEVRILMLTA AAEIGDRVDG LSLGADDYLT KPFAFPELAA RVHALGRRSR
PAAPPVLRRA GITVDTARRQ VFRDGRYIPL SKKEFAVLTE LVRGDGEVVS AEQLLEKAWD
EHVDPFTGVV RLTILKVRRK LGEPQIIETV PGVGYRIP