Gene Snas_5872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_5872 
Symbol 
ID8887088 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp6233275 
End bp6234033 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content64% 
IMG OID 
ProductIntegral membrane protein TerC 
Protein accessionYP_003514594 
Protein GI291303316 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.65064e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.519353 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGTTGC TGACCAGTCC TGAAGTCTGG GTGTCGTTTT TCACGTTGCT CATACTCGAA 
CTGATCCTCG GAGTCGACAA CGTCGTCTTC ATTTCCATAT TGACCGGACG GCTTCCCGAG
GAGCAGCGCC CCCGGGCCCG GTTCTGGGGG CTGCTCATGG CGCTCCTCAC CCGGCTCGCG
CTGCTGGCGA CGCTGTCGTG GATGGTCGGC GCCACCGCGA ACCTGTTCAA GCTGTTCGGC
ATGGGTTTCT CGTGGCGGGA CATCATTCTC ATCGTCGGCG GGTTGTTCCT GCTGGTGAAG
TCGGTGCACG AGATCCACGT CCGGCTGGAG GGGCCGGAGC CCGAGCAGGG GGGCAACGGA
GGCGGCGGCA AGACCGCCGG TTTCACCTCG GTGATCATCC AGATCGCGCT GCTGGACATC
GTGTTCTCGC TGGACTCGGT CATCACCGCC GTGGGCATGG TCGACGAACT GGTCGTCATG
GCCGCCGCCA TCGTCGTGGC CATCGCGCTG ACGCTGGTGT TCGCCAAACC GATCTGGGGC
TTCATCGACC GGCACCCCAC CGTCAAGATG CTGGCCCTGT CGTTCCTGGT CCTCATCGGC
GCGGCGCTGA TCGCCGACGG TTTCGAGCAG CACATCCCCA AGGGCTATGT GTACGGCCCG
ATCGCGTTCT CGCTGCTGGT CGAGCTGCTG AACATCCGCG CGAAGAAGGC CGCCGCCAAA
CCGGTCGAAC TGCGCGAGCC GCACGCCAAA GACCACTGA
 
Protein sequence
MELLTSPEVW VSFFTLLILE LILGVDNVVF ISILTGRLPE EQRPRARFWG LLMALLTRLA 
LLATLSWMVG ATANLFKLFG MGFSWRDIIL IVGGLFLLVK SVHEIHVRLE GPEPEQGGNG
GGGKTAGFTS VIIQIALLDI VFSLDSVITA VGMVDELVVM AAAIVVAIAL TLVFAKPIWG
FIDRHPTVKM LALSFLVLIG AALIADGFEQ HIPKGYVYGP IAFSLLVELL NIRAKKAAAK
PVELREPHAK DH