| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_5146 |
|---|
| Symbol | |
|---|
| ID | 8886354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 5470841 |
|---|
| End bp | 5474518 |
|---|
| Gene Length | 3678 bp |
|---|
| Protein Length | 1225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | 2-oxoglutarate dehydrogenase E1 subunit |
|---|
| Protein accession | YP_003513874 |
|---|
| Protein GI | 291302596 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.449932 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGACTC AAGACCGCAA CGCGACCAGT AAGTCCAACC CACTCTCGGA GTTCGGGCCG
AACGAGTGGA TCGTCGAAGA CATGTATCAG CGATATCTCG CCGATCCGTC CAGTGTCGAG
TCCACCTGGC ACGAGTTCTT CGACGGTTAT CAACCGCACT CGGCCGATAC CGCGGCCGCC
GCCGAGACCA AGACCGAGGC CAAGCCGCAG TCCGCCCCAA AGACCGCGGA AACCGCCGAC
GCCAAGCCAG CGGCCAAACC CGCCGCGCAG GCCAGCCCCT CCAAGCCCGC CGCCAAGGCC
GACACCCCGC TGGCCGCCGA CGCACAGAGC AAGCCGCTGC GCGGCGTCGC CGCCAAGGTC
GCCGAGAACA TGGACGTCTC GCTGGAGATC CCCACCGCGA CAAGTGTTCG CGCGATCCCC
GCGAAGCTGC TGTCCGACAA CCGCATCGTC ATCAACAACC ACCTGCGTCG CGGTCGCGGC
GGCAAGGTCA GCTTCACCCA CATGATCGGC TACGCGCTGG TCAAGGCGCT GGCCAGCCAC
CCGGAGATGA ACAACTCCTA CGGCGTCGTC AACGGCAAGC CGACCATGGT CAGCCCCGCC
GCGGTCAACC TGGGCCTGGC CATCGACCTG AAGAAGGACG ACGGCTCGCG CACCCTCGTG
GTGCCCAGCA TCAAGGGCTG CCAGGACATG GACTTCCGGC AGTTCTGGCA GGCCTATGAG
GACATCGTCC GCAAGGCCCG CAACAACAAA CTGACCATGG AGGACTACGG CGGCACCACG
CTGACGCTGA CCAACCCCGG CGGCATCGGC ACCGTCCACT CGATACCGCG GCTGATGCGC
GGCCAGGGCA CCATCATCGG TGTCGGCGCC ATGGAGTACC CGGCCGAGTA CTCCGGCGCC
TCGGACGAGA CCATCGCCCG GCTCGGTGTC TCCAAGGCGA TCACCGTCAC CTCCACCTAC
GACCACCGCG TCATCCAGGG CGCGCAGTCC GGCGAGTTCC TCAAGCGGGT GCACGAACTG
CTGCTGGGCG CCGACGGCTT CTTCGACGAC GTCTTCACCT CGCTGCGGGT CCCCTACGAG
CCGGTGCGCT GGGTGCGCGA CGTCGCCCAC ACCTCCGAGG GCCAGATCGA CAAGGCCGCC
CGGGTCATCG AACTGATCCA CGCCTACCGG GTGCGCGGCC ACCTCATGGC CGACACCGAC
CCGCTGGAGT TCAAGATCCG GCGCCACCCC GACCTGGACA TCCTCGAACA CGGCCTGACC
CTGTGGGACC TGGACCGGGC GTTCCCGGTC GGCGGTTTCG CGGGCAAGTC CACGATGAAG
CTGCGCGACA TCCTCGGGGT GCTGCGCGAG TCGTACTGTC GCCGCGTCGG CATCGAGTAC
ATGCACATCC AGGAACCCGA GGAGCGGGCC TGGATCCAGC AGCGGGTGGA ACGGCCCTAC
GAGAAGCCCG ACATCGAGGA ACAGAAGCAC ATCCTGGGAC GGCTCAATGT CTCCGAGGCC
TTCGAGACCT TCCTGGGCAC CAAGTACGTC GGCCAGAAGC GGTTCTCGCT GGAGGGCGGC
GAATCGCTGA TCCCGCTGCT GGACGAGGTG CTGTCCAACG CGGCGCGCGA CAGCCTCGAC
GAGGTCGTCA TCGGCATGGC CCACCGCGGC CGCCTCAACG TGCTGTCCAA CATCGTCGGC
AAGCCGCCGG AGAAGATCTT CAGCGAGTTC GAGGGCGCCA TGGACCCCAA GTCGGTCCAG
GGTTCCGGCG ACGTCAAGTA CCACCTGGGC ATGACCGGCA AGTTCACCAC CTCCGACGGC
GAACACGCCA CGACGGTGTC GGTGGCGGCC AACCCGTCCC ACCTGGAGGC CGTGGACCCG
GTGCTGGAGG GCATCGTCCG CGCCAAGCAG GACCGCCTCG ACCTGGGCCT TGAGGGCTAC
ACCGTGCTGC CGCTGATGGT GCACGGTGAC GCGGCCTTCG CCGGTCAGGG CGTCGTCGCC
GAGACGCTGA ACCTGTCGCA GCTGCGCGGG TACCGCACCG GTGGCACCGT CCACGTCATC
ATCAACAACC AGGTCGGCTT CACCACCGCG CCGGAGTACT CGCGTTCCTC GCTGTACTCC
ACCGACGTGG CCCGGATGAT CCAGGCGCCG ATCTTCCACG TCAACGGCGA CGACCCCGAA
GCCGTCGTGC GGGTCGCCAA ACTGGCCTTC GAGTACCGGC AGGCGTTCAA CAAGGACGTC
GTCGTCGACA TGATCTGCTA CCGCCGCCGG GGCCACAACG AGGGCGACGA CCCCTCGATG
ACCAACCCGC TGATGTACCA GATCATCGAC GCCAAGCGCT CGGTCCGCAA GCTGTACACC
GAGGCCCTCA TCGGCCGCGG CGACATCTCG CTGGCCGACG CCGAAGAGGC GCTGAAGGAC
TACCACGACC AGCTGGAGCG GGTCTTCAAG GCCACCAAGG AATCGGTGTC GGCCAGTGGC
CAGCCGGTCC GCCAGCGCGC CGCCGAGCCC GAGGCCACCG TCGACACCAC CGTCAGCGCC
GAGCTGATCG CGCGCATCGG CAAGGCCCAC ACCGACGTCC CCGAGGGCTT CACCCCGCAC
AAGCGGGTGC GGCAGCTCCT CGAACGCCGC GAACAGATGT CCACCCAGGG CGGCATCGAC
TGGGCCTTCG GTGAACTGCT GGCCGTCGGC TCGCTGCTCA ACCAGGGCGT ATCGGTCCGG
ATGTCCGGTC AGGACACCCG ACGCGGCACC TTCGTGCAGC GCCACTCGGT GGTCGTCGAC
CACAACAACG AGCGCGAGTA CACCCCGGTC GCCCAGGTCG CCGACAACGG CGCCCGCTTC
TGGGTCTACG ACTCCCTGCT CAGCGAGTAC GCCGCGATGG GCTTCGAGTA CGGCTACTCG
GTCGAGAACC CCGACGCGCT GGTGATGTGG GAGGCCCAGT TCGGCGACTT CGCCAACGGC
GCCCAGTCGG TCGTCGACGA GTTCATCTCC TCGGGCGAAG CCAAGTGGGG CCAGCGTTCC
GGCGTGACCC TGCTGCTGCC GCACGGCCAC GAGGGCGCGG GCCCGGACCA CACCTCCGGC
CGCCCGGAGC GGTACCTGCA GCTGTGCGCC GAGGACAACA TGCGCATCGC CAACGTCACG
ACCCCGGCGA ACTACTTCCA CCTGCTGCGG CGCCAAGCGC TGTCGCCCAA GAAGAAGCCG
CTGGTCGTCT TCACGCCGAA GTTCCTGCTG CGCTACAAGC ACTGCGTGTC GGGCATCGAG
GAGTTCACCT CGGGCGGCTT CCGTCCGGTG CTGACCGACC CGCTGGTCGA CTCCGGGCAG
CTTCCCGCCG CGAACGTGCG CCGCGTCCTG CTGTGCTCGG GCAAGATGTA CTACCACCTG
GCCGACGCCC GGGAGCTGAA CGGCAACACC GACACGGCGA TCATCCGCCT GGAGCAGCTC
TTCCCGCTCC CGGTGGACGA GCTCAAGGCG GCGCTGGCAC CGTTCACGGG CGCCTCCGAG
CACGCCTGGG TCCAGGAGGA ACCGGCCAAC CAGGGTGCCT GGTCGTTCAT CGCCCTGAAC
CTGCTCGAGC ACCTGGACGG CATCAGCCTG CGTCGCCTCT CGCGTCCGGC CGCCGCCGCC
CCCTCGGTGG GTGTCAAGAA GGTCCACGAC GTCGAGCAGC AGGCCCTGCT GGACGTCGCG
ATCCCGCCGA AGAAGTAG
|
|---|
| Protein sequence | MSTQDRNATS KSNPLSEFGP NEWIVEDMYQ RYLADPSSVE STWHEFFDGY QPHSADTAAA
AETKTEAKPQ SAPKTAETAD AKPAAKPAAQ ASPSKPAAKA DTPLAADAQS KPLRGVAAKV
AENMDVSLEI PTATSVRAIP AKLLSDNRIV INNHLRRGRG GKVSFTHMIG YALVKALASH
PEMNNSYGVV NGKPTMVSPA AVNLGLAIDL KKDDGSRTLV VPSIKGCQDM DFRQFWQAYE
DIVRKARNNK LTMEDYGGTT LTLTNPGGIG TVHSIPRLMR GQGTIIGVGA MEYPAEYSGA
SDETIARLGV SKAITVTSTY DHRVIQGAQS GEFLKRVHEL LLGADGFFDD VFTSLRVPYE
PVRWVRDVAH TSEGQIDKAA RVIELIHAYR VRGHLMADTD PLEFKIRRHP DLDILEHGLT
LWDLDRAFPV GGFAGKSTMK LRDILGVLRE SYCRRVGIEY MHIQEPEERA WIQQRVERPY
EKPDIEEQKH ILGRLNVSEA FETFLGTKYV GQKRFSLEGG ESLIPLLDEV LSNAARDSLD
EVVIGMAHRG RLNVLSNIVG KPPEKIFSEF EGAMDPKSVQ GSGDVKYHLG MTGKFTTSDG
EHATTVSVAA NPSHLEAVDP VLEGIVRAKQ DRLDLGLEGY TVLPLMVHGD AAFAGQGVVA
ETLNLSQLRG YRTGGTVHVI INNQVGFTTA PEYSRSSLYS TDVARMIQAP IFHVNGDDPE
AVVRVAKLAF EYRQAFNKDV VVDMICYRRR GHNEGDDPSM TNPLMYQIID AKRSVRKLYT
EALIGRGDIS LADAEEALKD YHDQLERVFK ATKESVSASG QPVRQRAAEP EATVDTTVSA
ELIARIGKAH TDVPEGFTPH KRVRQLLERR EQMSTQGGID WAFGELLAVG SLLNQGVSVR
MSGQDTRRGT FVQRHSVVVD HNNEREYTPV AQVADNGARF WVYDSLLSEY AAMGFEYGYS
VENPDALVMW EAQFGDFANG AQSVVDEFIS SGEAKWGQRS GVTLLLPHGH EGAGPDHTSG
RPERYLQLCA EDNMRIANVT TPANYFHLLR RQALSPKKKP LVVFTPKFLL RYKHCVSGIE
EFTSGGFRPV LTDPLVDSGQ LPAANVRRVL LCSGKMYYHL ADARELNGNT DTAIIRLEQL
FPLPVDELKA ALAPFTGASE HAWVQEEPAN QGAWSFIALN LLEHLDGISL RRLSRPAAAA
PSVGVKKVHD VEQQALLDVA IPPKK
|
|---|
| |