Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Snas_5095 |
Symbol | |
ID | 8886303 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stackebrandtia nassauensis DSM 44728 |
Kingdom | Bacteria |
Replicon accession | NC_013947 |
Strand | + |
Start bp | 5411698 |
End bp | 5413512 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | |
Product | Xylose isomerase domain-containing protein TIM barrel |
Protein accession | YP_003513823 |
Protein GI | 291302545 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0443788 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTGACA ACGCTCCCCG CCACCGAAGG GGAATCGCGA CCGTCTGCCT GTCGGGAACC ATCGAGGACA AACTGCTGGC CGCCGCCGAG GCTGGTTTCG ACGGTGTGGA GATCTTCGAG AACGACCTGC TCGCCACGTC CCAGACCCCC GAACAGCTCC GGGACCGCTG CCGCGACCTG GGGCTGCGCA TCGACCTGTA CCAGCCGTTC CGGGACTTCG AGGCCGCACC GCCACCCCGT CTAGCCGCCA ACCTGCGCCG CGCCGAGCAC AAGTTCGACC TCATGGAGCG GCTCGGCGTC GACACGGTGC TGGTGTGTTC CTCGGTCGCC CCCGACACCG TCGACGATGA CGACCTTGCC GCCGAACAAC TACACGCGCT CGCCGAACGC GCCGCGAAGC GCGGCATCCG CATCGCCTAC GAGGCGCTGG CCTGGGGAAG GTTCGTCAAC ACCTACAGCC ACTCGTGGGA CATCGTCGCC CGCGCCGATC ATCCCGCGCT GGGCCTGTGC CTGGACAGTT TCCACATCCT CTCGCGCGCC AGCGATCCAG CGGGTATCGC CGACATCCCC GGCGAGAAGC TGTTCTTCCT GCAACTGGCG GACGCACCGA GCCTGCGCAT GGACCCACTA CAGTGGAGCA GGCATCATCG AGTGTTCCCC GGGCAGGGGA ACTTCGACTT GAAGCGCTTC CTCGGGTACG TACTGGACGC CGGGTACGAC GGACCGCTGT CCCTTGAGGT CTTCAACGAC GTGTACCGAC AGGCCGATCC GCGTTGCACC GCTGTGGACG CCATGCGATC GCTTGTCGCT CTTGAGGAGT CCGTCGGTGT GCCGCTGCCC GCGCCGCCTC GGCTCACCGG TCATGCGTTC ACGGAGCTGA CCGTGGACGA GCCGACGCAA GCGCGGCTCG CCGATACGCT TACGGCCCTT GGCTTCACGC TCACCGGCCA TCACCGCGAG AGCCCCGTGG AGCTGTGGGA GCAGAACGCG ATCCGCGTAC TCGTCAACCG CGGCTCGTCG TCGGGCGGCG GTGCGGGCAT CAGTTCGCTG GCCGTCGAGA GCAGTGACCC TGTCGCGTCA GCGCGGCGGG CCGAAGCGCT GCTGGCCCCC GTGCACACGC CCGATGCGGC CATGCCCGCT GTCACGGCGC CCGACGGCTC GCGGATCGTC TTCTGTGGAC CAGGCGAAGC CTGGCGGGAC CGGTTCCGGC CGTCCAGCGA AGCGAGTCGA GCTGAAGGTG GACTCACCCA CGTCGACCAC ATTGCCCTGA CCCAGCCCTT CGACCACTTC GACGAAGCCG CGCTCTTCCT CCACTCGGTC CTCGGCCTCG ACACAGAGGA CAACACCGAA TACGCCGCCC CGTTCGGGCT CGTCCGCGCC CGCGCTCTCA GCGACCCCGG CCACCACGTC CGCATCGCCC TCAGCGTCGC GCTCATCCGC CGAGGCGAGG AGTGGTCCCC CGGAGTCCCC GCGCCCCAAC ACATCGCCTT CGCCACCGAC GACATCTTCA CCGTGGCCAC GACGCTGCGA ACCGCGGGCG CACCGCCACT CCCCATCCCC GACAACTACT ACGACGACCT CGACGCCCGG CTCGCCCCGC TTCGGCTGGC CGATCTCCGC GAACACCACA CCCTCTACGA CCGCGACAAC GACGGCGAAT TCCTGCACCT GTACACGCCA GTCCTCGGCG ATCGAGTGTT CTTCGAAGTG TGCCAACGCA TCGGCGGCTA CCTCGGCTAC GGCACCGCCA ACACACCGAT CCGGATGGCC GCGCACCGCC AACAACGGCT CGCGGCCCGC AGCGCCGCCG CGTGA
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Protein sequence | MPDNAPRHRR GIATVCLSGT IEDKLLAAAE AGFDGVEIFE NDLLATSQTP EQLRDRCRDL GLRIDLYQPF RDFEAAPPPR LAANLRRAEH KFDLMERLGV DTVLVCSSVA PDTVDDDDLA AEQLHALAER AAKRGIRIAY EALAWGRFVN TYSHSWDIVA RADHPALGLC LDSFHILSRA SDPAGIADIP GEKLFFLQLA DAPSLRMDPL QWSRHHRVFP GQGNFDLKRF LGYVLDAGYD GPLSLEVFND VYRQADPRCT AVDAMRSLVA LEESVGVPLP APPRLTGHAF TELTVDEPTQ ARLADTLTAL GFTLTGHHRE SPVELWEQNA IRVLVNRGSS SGGGAGISSL AVESSDPVAS ARRAEALLAP VHTPDAAMPA VTAPDGSRIV FCGPGEAWRD RFRPSSEASR AEGGLTHVDH IALTQPFDHF DEAALFLHSV LGLDTEDNTE YAAPFGLVRA RALSDPGHHV RIALSVALIR RGEEWSPGVP APQHIAFATD DIFTVATTLR TAGAPPLPIP DNYYDDLDAR LAPLRLADLR EHHTLYDRDN DGEFLHLYTP VLGDRVFFEV CQRIGGYLGY GTANTPIRMA AHRQQRLAAR SAAA
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