Gene Snas_4946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_4946 
Symbol 
ID8886153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp5255367 
End bp5256041 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content69% 
IMG OID 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_003513680 
Protein GI291302402 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.13115 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGACG TGATCCGGGT ACTGCTGGCC GACGACCAGG CACTGGTGCG CGCGGGTTTC 
CGGGCCCTGC TGGACTCCTG CGACGACATC TCGGTGGTCG GCGAGGCCAA CGACGGCGAG
GAGGCGTTCC GCCTCATCCG CGACATGGTT CCCGACGTGG TCCTGATGGA CATCCGGATG
CCGGGCCTGG ACGGGCTCGC GGCCACCGCG AAGATCACCG CCGAGGCGTC GCTGACCAGC
GTCCGCATCA TCATCCTGAC GACCTTCGAC CTCGACGAGT ACGTCTTCGA GGCGCTGCGC
TCGGGCGCCA GCGGCTTCCT CGTCAAGGAC ACCGAACCGG TGGAACTGCT GCAGGCGGTG
CGGGTGGTGG CGCGCGGCGA CGCGCTGCTG TCGCCCGGCG TCACCCGACG GCTGGTCGCC
GAGTTCGCGC AGCGCGCGAA GGAACCGGTG TCGGCCAAGA AACTGGAGCA GCTGACCGAA
CGCGAGCGCG AAGTGGTGGC GCTGGCCGGA ACCGGCCTGT CCAATGAGGA GATCGGCGCG
AAGCTGTTCC TCAGTCCCGC CACCGCCAAG ACCCACATCA GCCGGGCCAT GATCAAGCTC
GGCGCCCGCG ACCGGGCCCA GCTGGTGGTG TTCGCCTACG AGTCCGGCCT GGTGCGTCCG
GGCTGGCTGG GGTGA
 
Protein sequence
MSDVIRVLLA DDQALVRAGF RALLDSCDDI SVVGEANDGE EAFRLIRDMV PDVVLMDIRM 
PGLDGLAATA KITAEASLTS VRIIILTTFD LDEYVFEALR SGASGFLVKD TEPVELLQAV
RVVARGDALL SPGVTRRLVA EFAQRAKEPV SAKKLEQLTE REREVVALAG TGLSNEEIGA
KLFLSPATAK THISRAMIKL GARDRAQLVV FAYESGLVRP GWLG