| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_4390 |
|---|
| Symbol | |
|---|
| ID | 8885591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 4680637 |
|---|
| End bp | 4682373 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | DNA polymerase III subunit epsilon |
|---|
| Protein accession | YP_003513130 |
|---|
| Protein GI | 291301852 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.794868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGAGTC AAGGGACGTC CGGCTACGTC CAACCGTCTT TTGAGGATCT GGGCACCCCG
CTGTCCGAAG TGACCTTCAT GGTCGTCGAT CTGGAGACGA CCGGCGTGGC CTCCGACGCG
TGCTCGATCA CCGAGATCGG CGCGGTGAAG GTGCGCGGCG GCGAGGTGCT GGGCGAGTAC
GCCACCCTCG TCAACCCCGG CGAGGCCATC GACGCGCGCA TCAGCGCCCT GACCGGCATC
ACCGACGCGA TGGTCGCCGA CGCCCCGGCC ATCGAGGAAG TACTACCATC CTTTTTGGAG
TTCGCGCGGG GCGCGGTGTG GGTGGCGCAC AACGCGCCCT TCGACGTGGG TTTCCTGCGC
AGCGCCTGCG CACAGGCCGA GCTGCCGTGG CCGAGGCCGC AGGTGGTGGA CACCGTGGTC
TTGGCGCGGC GGCTGGTGGA CCGCAGCGAG GTCCCCAACA AGCGGCTGTC CACTCTGGCG
CGGTACTTCG GTGCCCGGGT CAAGCCCAGC CACCGGGCCC TGGACGACGC TCGCGCCACT
GTGGACGTCC TGCACGCGCT GCTGGAGCGG CTGGGCACCC ACTACGTGCT CACCGACGAG
GACCTCGCCG ATTTCCAGCG CGTCATCCCG GCCGCCGAGC GCCGCAAGAA GCGGCATCTG
GCCGAGGGGC TGCCGCACGC GCCGGGCGTG TACGTGTTCC GCGACGCCGA GGACCGTCCA
CTGTATGTGG GCACCTCGGT CGACCTGGCC GCCCGGGTGC GCGGTTACTT CTCCGCCGGG
GAGACCCGCG GCAAGATGCG CGACATGTTG CGGCTGGCCG AGCGGGTCGA GGCCATCGAG
TGCGCGCACC GGCTGGAGGC CGGGGTGCGG GAGGTGCGGC TCATCGGCGC CACCAAGCCA
CCGTTCAACC GGCGCTCCAA GTATCCGGAG CGGGTGCTGT GGCTGCGGTT GACGGCCGAG
GCCTATCCCC GGCTGTCGGT GGCCCGCACG CCGCCCGAGG CGGGCTCGGC CTGGCTGGGG
CCGTTCACCT CGCAGCGTTC GGCCGAGTAC GCCCGCGACG CGGTGCACGA CGCGCTGCCG
CTGCGGCAGT GCCGCACCCG GTTGTCGCCG CGCAAGGTCT CCTCGGCGTG CGCGCTGGCC
GAGATGGGCT GCCCGGCCCC GTGTCAGTTG TCGATCGGCG TGGACGAGTA CGGCAAGATC
GCCGCGGGTT TCGCCGAGGC CGTCGCCGCC GACCCGGCCG CGATCGTGGA TCCGCTGCTG
GCGCGGATCG CGCAGTTGTC GGACGCGCAC CGCTTCGAGG AGGCCGCCGA GGCGCGGTCG
CGGCTGGCGG CGTTCCTGCG CGGCGTCAAG CGCACCCAGC GGGTGAGCGC GCTGGTGCGG
ATCGCGGAGC TGGTGGCGGC CAAACCCGCC GCCGGTGGTG GCTGGGAACT GGCGGTGGTG
CGCCACGGGG TGTTGGCCGC GGCGGGTACC AGTCCGCCCC GCACCGATCC CATGCCCCTT
GTGGACTCAC TGCGCGCCGA ATCCTCTACT GTGGTCCCCG ACGCGGCCGT ACTGGCCGCC
TCCAGGCTCG GCGAGACCGA ACTGATAGCC GATTGGCTGG AATCCGACGG GGTCCGATTG
GTACACAGCG AATCCGGCTG GTGGCTGCCC GCGTCCGGGG CCGGGAAGTA TCAGTCACTC
CTGCGTCGGC TCAGTGCCGC TGACGCCGCA CGGCGAGTAG AGTTTCAAAT ACCATAG
|
|---|
| Protein sequence | MSSQGTSGYV QPSFEDLGTP LSEVTFMVVD LETTGVASDA CSITEIGAVK VRGGEVLGEY
ATLVNPGEAI DARISALTGI TDAMVADAPA IEEVLPSFLE FARGAVWVAH NAPFDVGFLR
SACAQAELPW PRPQVVDTVV LARRLVDRSE VPNKRLSTLA RYFGARVKPS HRALDDARAT
VDVLHALLER LGTHYVLTDE DLADFQRVIP AAERRKKRHL AEGLPHAPGV YVFRDAEDRP
LYVGTSVDLA ARVRGYFSAG ETRGKMRDML RLAERVEAIE CAHRLEAGVR EVRLIGATKP
PFNRRSKYPE RVLWLRLTAE AYPRLSVART PPEAGSAWLG PFTSQRSAEY ARDAVHDALP
LRQCRTRLSP RKVSSACALA EMGCPAPCQL SIGVDEYGKI AAGFAEAVAA DPAAIVDPLL
ARIAQLSDAH RFEEAAEARS RLAAFLRGVK RTQRVSALVR IAELVAAKPA AGGGWELAVV
RHGVLAAAGT SPPRTDPMPL VDSLRAESST VVPDAAVLAA SRLGETELIA DWLESDGVRL
VHSESGWWLP ASGAGKYQSL LRRLSAADAA RRVEFQIP
|
|---|
| |