| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_3928 |
|---|
| Symbol | |
|---|
| ID | 8885128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | - |
|---|
| Start bp | 4193710 |
|---|
| End bp | 4195143 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | protoporphyrinogen oxidase |
|---|
| Protein accession | YP_003512676 |
|---|
| Protein GI | 291301398 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCGC GGCACGTCGT CGTGGTCGGT GGCGGTATCG CCGGGCTCGC GGCGGCGCAG
CGGTTGCGGG AGCTGGGTGG TCCGGAGCTG CGGATCACCG TGGTGGAGCA GGCGCCTCGG
CTGGGCGGCA AGATCCGTAC CGGTGAGCTG GCGGGGGTGC CGGTGGAGAC CGGTGCCGAG
ACGTTCCTGG TGCGGCGGCC CGAGGCCAAG GCGTTGGCTG AGACCGTCGG GTTGGGGGCG
CGGCTGGTTC ATCCGGCGGC GGCTCCGGCG GCATTGGTCA TCGATGACGA GCTGCGCGAT
CTGCCGCGTC GTACCGTCAT GGGGGTCCCG GCGCGGGCCG ACGATGTGGC GGGTGTGCTG
AGCCCGGCGG GCCGTGAACG GTTGGAGCAA GAACCGGTGG GGGACGGGCC GATCCTCGGC
GATGAGGACG TGACCGTCGG AGCGTTGGTG CGTAAGCATT TCGGCGACGA GATCGTCGAT
CGGCTCGTCG ATCCGCTGCT GGGTGGTGTC TACTCGGGAC GGGCCGATGG ACTGTCGGTG
GACGTGACGG TGCCGCAGTT GGCGGCTGCC GCTCGACGGC ACGACACCTT GGCCGGGGCG
GTGGCGGATT GTCTGCCGCC CGTAGCGGGT GCGCCATCGG CGGGTTCGGC CGCGTTCGGG
GCTGCCGCTT CGGGTTCGGC TTCGTCGGTC CCGCCAGTCT TCGGTTCCGT CGAGGGTGGA
CTGTCGCGGT TGGTCGAGGC CACGGCCACC GCCGCCGCAG CCGAGATCGT GTTGGGCAAG
CCGGTGCGGG AACTGCGGCG CACGCCCGAG GGGTGGCGTT GCGTCGCCGG TGACACCCGC
ACGCCGCGCG TCATCGAGTG CGACGCGTTG GTGTTGGCCA CGCCCGCTCG TCCGGCGGCG
CGGTTGCTGG CCGATGTGGA GGCTGCCGCC GCCGCTGAGC TGGGTGTGCT CGACTACGCC
AGCATCGCGT TGGTGACGTT GGCGTTGGGT GGGGTGGAAC TGCCGCAGCG GTCGGGGTTC
CTGGTGCCCG CGACGGAGGG CCGCACCATC AAGGCCGCGA CGTTCTTCAC GCGGAAGTGG
CCCCATCTGG CGCGGCCCGG GCTCAGCCTC GTACGGGTGT CGTTGGGCCG GTACGGCGAG
GAGCAGGTCC TGCAGCGCGA CGACGCCGAA CTGGCCGACA TCGCGCATGC CGAACTGTCG
GCTGTGCTCG GCATGGAGTT GCCACGGCCG CGAGCGGTCG CCGTGGATCG CTGGGGTGGC
GGGTTGCCGC AGTACTCGGC GGGGCACGCC GACCGGATCC GGCGGGCCCG GGCGGCGCTG
GCCGAGCATC CGATCGCGTT GGCCGGGGCG TTGGCCGACG GGGTGGGGAT TCCGGCCTGT
GTCGCGTCGG GACGGGCCGC CGCCGAGGCC GTCCACGCTA CACTTACGAC GTAA
|
|---|
| Protein sequence | MTPRHVVVVG GGIAGLAAAQ RLRELGGPEL RITVVEQAPR LGGKIRTGEL AGVPVETGAE
TFLVRRPEAK ALAETVGLGA RLVHPAAAPA ALVIDDELRD LPRRTVMGVP ARADDVAGVL
SPAGRERLEQ EPVGDGPILG DEDVTVGALV RKHFGDEIVD RLVDPLLGGV YSGRADGLSV
DVTVPQLAAA ARRHDTLAGA VADCLPPVAG APSAGSAAFG AAASGSASSV PPVFGSVEGG
LSRLVEATAT AAAAEIVLGK PVRELRRTPE GWRCVAGDTR TPRVIECDAL VLATPARPAA
RLLADVEAAA AAELGVLDYA SIALVTLALG GVELPQRSGF LVPATEGRTI KAATFFTRKW
PHLARPGLSL VRVSLGRYGE EQVLQRDDAE LADIAHAELS AVLGMELPRP RAVAVDRWGG
GLPQYSAGHA DRIRRARAAL AEHPIALAGA LADGVGIPAC VASGRAAAEA VHATLTT
|
|---|
| |