Gene Snas_3280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSnas_3280 
Symbol 
ID8884479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStackebrandtia nassauensis DSM 44728 
KingdomBacteria 
Replicon accessionNC_013947 
Strand
Start bp3466806 
End bp3468242 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content70% 
IMG OID 
Productputative L-arabinose isomerase protein 
Protein accessionYP_003512042 
Protein GI291300764 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.226314 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.533045 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGAGC TCGCCGTCCC CGCAGTCCAG CGCGTCCCCG CGCGGCCGGT CAAGATCGGC 
CTGGTCGCGG GCGGGCTCGG CGCCTACTGG CCGCAGTTTC CCGACCTGCT GCCCGCGCTG
AAACAGTCGG CCGCCCGGGT GTCGGACAAG ATGCGCGACC TGGGCGCCGA CATCACCGAC
GTCGGCTTCA TCTCCGACGA ACGCGAAGCC GCCGACGCGG CCGAACGGCT GCGCGTCGCC
GGTTGCGACC TCGTGGTGGT CTACCTGACC ACCTACATGA CCGCCTCGAT GGTGGTGCCG
ATCGCGCAGC GGGTGGACGC CCCCATCCTG TGCCTCAACC TCCAGCCCAC CGAGGCCATG
GACCACGCGA CAGTGGACAC CGGCCGCTGG CTCGCCTACT GCGGCGCCTG CCCGCTGCCC
GAAGTCGCCA ACGCCTTCGA ACGCTGCGGC ATCGGTTTCC GTTCCGTCTC AGGGCATCTG
GAGGACGCCA ACGCGTGGAA CCGCATCGCC CGCTGGATCG CCGCGGCGGG AGTGCGCGGC
GGACTGCGCA CCGCACGGCA CGGGCTGATG GGCCACCTGT ACCCGGGCAT GCTGGACGTC
TCCACCGACC TGACCATGGT CACCGCCTCC TTCGGCGGTC ACATCGAGGT CCTCGAATAC
GACGACCTGC GGGTGCGCAC CCACGCCGTC ACACCCTCCG AAGTGGAAGC CAAGCTGGCG
CAGGCCCGCG AGATCTTCGA GGTCACCGAC TCCGTGGTCG ACGAGGATTT CGAGTGGGGC
GCACGAGTCG CCTGTGGACT GGACCGGCTG GTGGACGACT TCGGCCTCGA CAGCCTCGCC
TACTATCACC GCGGCCTCGA AGGCGAACAA CACGAACGCC TCGCCGCCGG GATGATCCTC
GGCGCCTCGC TGCTGACCGC CCGCGGCATC CCCGCCGCCG GAGAGTACGA GCTGCGCACC
TCACTGGCGA TGCTCATCGC CGACCGGCTG GGCGCGGGCG GATCGTTCAC CGAACTACAG
GCGCTGAACT TCCGCGACGG CGTCGTCGAG ATGGGACACG ACGGCCCCGC GCACCTGGCG
ATCAGCAACG GCCGTCCACT GCTGCGCGGA CTCGGCGTCT ACCACGGCAA ACGCGGCTGG
GGCGTGTCGG TGGAACTCGA CGTGGCCCAC GGACCGGTCA CCCTGCTGGG CGTCGGCCAG
ACCCGCGACG GCTCCTACCG CCTGATCGCC GCCGAGGGCA ACATCGTGGA CGGACCCCTG
ATGCGCATCG GCAACACGAC CTCCCGGGTT GACTTCGGCC GCGACCCGGG CGAATGGACC
GACGACTGGA GCGCCAGCGG TGTCGGCCAC CACTGGGCAC TCGCGGTGGG ACACCGCGTC
GGTGAGCTGC GCTGCACCGC CGAACTGCAA GGTCTGGAGC TGGTCGAGGT CCGCTAG
 
Protein sequence
MTELAVPAVQ RVPARPVKIG LVAGGLGAYW PQFPDLLPAL KQSAARVSDK MRDLGADITD 
VGFISDEREA ADAAERLRVA GCDLVVVYLT TYMTASMVVP IAQRVDAPIL CLNLQPTEAM
DHATVDTGRW LAYCGACPLP EVANAFERCG IGFRSVSGHL EDANAWNRIA RWIAAAGVRG
GLRTARHGLM GHLYPGMLDV STDLTMVTAS FGGHIEVLEY DDLRVRTHAV TPSEVEAKLA
QAREIFEVTD SVVDEDFEWG ARVACGLDRL VDDFGLDSLA YYHRGLEGEQ HERLAAGMIL
GASLLTARGI PAAGEYELRT SLAMLIADRL GAGGSFTELQ ALNFRDGVVE MGHDGPAHLA
ISNGRPLLRG LGVYHGKRGW GVSVELDVAH GPVTLLGVGQ TRDGSYRLIA AEGNIVDGPL
MRIGNTTSRV DFGRDPGEWT DDWSASGVGH HWALAVGHRV GELRCTAELQ GLELVEVR