| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Snas_2975 |
|---|
| Symbol | |
|---|
| ID | 8884174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stackebrandtia nassauensis DSM 44728 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013947 |
|---|
| Strand | + |
|---|
| Start bp | 3142544 |
|---|
| End bp | 3144670 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | excinuclease ABC, C subunit |
|---|
| Protein accession | YP_003511742 |
|---|
| Protein GI | 291300464 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.720202 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0556657 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACACACC CGGCGGTTAA CCTGTCCGAC GTGGTCACCG AAACCGGCGC CAGCCTGCCA
TACCGTCCCG CCCCCGGTAC GATTCCCGAA TCGCCGGGGG TGTACCGCTT CCGCGACACC
GACGGACGCG TCATCTACGT CGGCAAGGCC AAGAGCCTGC GGCAGCGGCT GAACTCGTAC
TTCGCCGACC CGACCAAGCT GCACCCGCGC ACCTACCAGA TGGTGCACAC CGCGACCTCC
GTCGACTGGG TGGTGCTGGC CACCGAGGTC GAGGCGCTGC AACTGGAGTA CACCTGGATC
AAGAAGTACG ACCCGCGGTT CAACGTCATG TACCGCGACG ACAAGTCGTA CCCGTACCTG
GCAGTCACCC TCGACGAGGA GTACCCCAGG CTCCAGGTCA TGCGGGGCGA CCGCCGCAAG
GGCGTGCGCT ACTTCGGGCC CTACTCGCAC GCCTGGGCCA TCCGCGAGAC CCTCGACCTG
CTGCTGCGGG TTTTCCCGGC CCGCACCTGC GGGGCCTCGG TGTTCAACCG GGCCCGCAAG
ATCAACCGGC CCTGCCTGCT GGGCGACATC GGCAAGTGCG CCGCCCCCTG CGTGGGGCGG
GTCAGCGCCG CCGAGCACCG CGAGATCGTG GACGAGTTCT GCGCGTTCAT GGCCGGAAAG
ACCGACACCT TCGTCAAACG CGTCGAGGCC GAGATGCACG AGGCCTCCGA GGCGCTGGAC
TTCGAGCGCG CCGCCCGCCG CCGCGACGAC CTGGCCGCGC TGCATCGGGC GCTGGAGAAG
CAGCTGGTGG TGCTCGCCGA GGACAAGGGC ACCGACATCG ACGTGGTGGA GATGTTCGAC
GACGAGTTGC AGGCGGCGGT GCAGGTCTTC CACGTCCGCG GCGGCCGGGT CACCGGGCAG
CGCGGCTGGA TCGTCGACAA ACCCGAGGGC GTCACCGACG GCGACCTCGT CCACTCGCTG
TGCACCCAGT TCTATGGTGG ACGGTCGGGT AAGGACATTC CGAAGGAGGT GCTGGTCCCG
GCGCTGCCGG AGGACGCGAC CGCGCTCACC GACTGGCTGT CGGAACTGCG CGGTTCGAAG
GTGGGGGTGC GCATCCCGCA GCGCGGCGAC AAGAAGGCGC TGGCCGAGAC CGTCAAACGC
AACGCCGAGC AGGCCCTGGT GCAGCACAAA CTCAAACGCG CCTCCGACCT GACCACCCGG
GGCAAGGCCC TGGAGGAACT GGCCGAGGCG CTGGACCTGC CCGGCGCCCC GCTGCGGATC
GAGTGTTTCG ACGTGTCCCA GATGCAGGGC ACCGACGTGG TGGCCAGCAT GGTGGTCTTC
GAGGACGGCC TGCCGCGCAA GGCCGAGTAC CGGCGGTTCG TGGTGCGCGG CGAACGCACC
GACGACCTGG CCTCGATGCA CGAGGTGCTG ACGCGGCGGC TGAGCAAGGT CGACGAGAGC
GCGCCGCTCA TCGACGAGGA CGGCAAGAAA CGCCGCTTCG CCTACCCGCC ACAGCTTCTG
GTCGTCGACG GGGGTGCCCC GCAGGTGGCG GTGGCCGACA ACGTCCTGGC CGAGCAGGGC
ATCGACACGG TCAACGTGTG CGGCCTGGCC AAGCGGCTGG AGGAGGTGTG GCTGCCGGGG
GAGGAGTACC CGGTGATCCT GCCGCGCCGC TCCGAGGCGC TGTACCTGTT GCAGCGGGTC
CGCGACGAGG CGCACCGCTT CGCGATCTCG CTGCACCGCA AGCGGCGGGG CAAGAAGGTG
ACCGCCTCGG CCCTCGACAG CGTCCCGGGC CTGGGCCCGA CGCGCCGCAA GGCGCTGTTG
CGGCACTTCG GCTCGGTCAA GAAGATCCGA GAAGCCACAG TGGACGAGAT AGCGGAGGTG
ACCGGCATCG GCCCCGCCCT GGCGGCCACC ATCACCGCCT CGCTGACCGA GGGCGCGACG
CCAACGGCCG CAGCCGATCA GCCGGAAACC GTGGCCGAGG GCGACAAGCC CGAAGCCGAC
GCGCGGGACA CGGAGCCGAG GCCGTCCGAC GCCGCCGAAT CCGAGAGCTC GGGCACCGAG
CCGTCCGACG CTGTGAGCAG TGCCGAGGCG CCGGTCACAC AGGACGGGTC CGGCTTGGGA
AACCCGGGCC ACGACGCCGG GTCGTGA
|
|---|
| Protein sequence | MTHPAVNLSD VVTETGASLP YRPAPGTIPE SPGVYRFRDT DGRVIYVGKA KSLRQRLNSY
FADPTKLHPR TYQMVHTATS VDWVVLATEV EALQLEYTWI KKYDPRFNVM YRDDKSYPYL
AVTLDEEYPR LQVMRGDRRK GVRYFGPYSH AWAIRETLDL LLRVFPARTC GASVFNRARK
INRPCLLGDI GKCAAPCVGR VSAAEHREIV DEFCAFMAGK TDTFVKRVEA EMHEASEALD
FERAARRRDD LAALHRALEK QLVVLAEDKG TDIDVVEMFD DELQAAVQVF HVRGGRVTGQ
RGWIVDKPEG VTDGDLVHSL CTQFYGGRSG KDIPKEVLVP ALPEDATALT DWLSELRGSK
VGVRIPQRGD KKALAETVKR NAEQALVQHK LKRASDLTTR GKALEELAEA LDLPGAPLRI
ECFDVSQMQG TDVVASMVVF EDGLPRKAEY RRFVVRGERT DDLASMHEVL TRRLSKVDES
APLIDEDGKK RRFAYPPQLL VVDGGAPQVA VADNVLAEQG IDTVNVCGLA KRLEEVWLPG
EEYPVILPRR SEALYLLQRV RDEAHRFAIS LHRKRRGKKV TASALDSVPG LGPTRRKALL
RHFGSVKKIR EATVDEIAEV TGIGPALAAT ITASLTEGAT PTAAADQPET VAEGDKPEAD
ARDTEPRPSD AAESESSGTE PSDAVSSAEA PVTQDGSGLG NPGHDAGS
|
|---|
| |