| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mrub_3013 |
|---|
| Symbol | |
|---|
| ID | 8881132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Meiothermus ruber DSM 1279 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013946 |
|---|
| Strand | - |
|---|
| Start bp | 3053978 |
|---|
| End bp | 3054940 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | |
|---|
| Product | CRISPR-associated protein Cas1 |
|---|
| Protein accession | YP_003508777 |
|---|
| Protein GI | 291297379 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00425226 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00852288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACG AGACCCGCAA CCTCCAGGAA CTCCCCAAAT TCCGCGATGG GCTCTCGTAC
CTTTACCTGG AACACGGCCG CCTCGAGCAG CAAGACCAGG CGGTGGCCTA CTACAGCCAG
GAAGGGGTGG TAGCCATCCC GGCGGCGGCG CTGGGGGTGC TGATGCTGGG CCCTGGCACC
TCCATCACCC ACGCCGCTAT ACGCCAGCTA GCCAACAACG GCTGTTCAGT GTTCTGGGTG
GGTGAGGAGA TGGTGCGCTT CTATGCCAGC GGGATGGGGG AGACCCGCTC CAGCGCCAAC
CTGATGCGCC AGGTGCGGGC CTGGGCCGAC CCCGAGGCCC ACCTCGAGGT GGTCAAGCGC
CTCTACCGGC TGCGCTTTCC CGAGCCGCTG TCGCCCGAGC TTTCCCTTGA GCAAATCCGG
GGCCTGGAAG GGGTGCGGGT GCGCGAGACC TACGCCCGCT GGAGCCGCGA GACCGGCGTG
GAGTGGAAGG GCCGCAACTA CCAGCGGGGC AACTGGGCCG CCGCCGACCC CATCAACCGC
GCCATCTCCG CCGGGGCAGC CTGCCTGTAT GGCCTGGCCC ACGCCGCCAT CCTCTCGGCG
GGCTACAGCC CGGCCCTGGG CTTCATCCAC ACCGGTAAGC AGCTTTCCTT CGTTTACGAC
GTGGCCGATA TCTACAAGGC CGAAACCCTC ATACCCACCG CCTTCCGAGT GGTCGCCGAG
TCGGACGTGG GCGTCGAACG CCGCGTGCGC CACACCCTGC GCGAACAGCT TAAGGAGGTC
AAGCTCCTGG AGCGCATCGT CTCCGACCTG CATAGCCTCT TCGATGCCCT CGAGACCCCC
GACCCCTACG CTGCCGACCC CGCAGCACCG GGCGATCTAT GGGATCCCGA CGGCCCGGTT
CCAGGTGGGA TAGCCTATGG TAGTGATCGT CCTGGAGAAG GTACCCAAGA CCCTGAGGGG
TGA
|
|---|
| Protein sequence | MKYETRNLQE LPKFRDGLSY LYLEHGRLEQ QDQAVAYYSQ EGVVAIPAAA LGVLMLGPGT
SITHAAIRQL ANNGCSVFWV GEEMVRFYAS GMGETRSSAN LMRQVRAWAD PEAHLEVVKR
LYRLRFPEPL SPELSLEQIR GLEGVRVRET YARWSRETGV EWKGRNYQRG NWAAADPINR
AISAGAACLY GLAHAAILSA GYSPALGFIH TGKQLSFVYD VADIYKAETL IPTAFRVVAE
SDVGVERRVR HTLREQLKEV KLLERIVSDL HSLFDALETP DPYAADPAAP GDLWDPDGPV
PGGIAYGSDR PGEGTQDPEG
|
|---|
| |