Gene Mrub_0110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMrub_0110 
Symbol 
ID8878177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMeiothermus ruber DSM 1279 
KingdomBacteria 
Replicon accessionNC_013946 
Strand
Start bp87023 
End bp88699 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content62% 
IMG OID 
ProductRNA binding S1 domain-containing protein 
Protein accessionYP_003505911 
Protein GI291294513 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.33742e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.284586 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGACC AAGCTACCCA GACTCCAGTG GAAACTGGAA AAGAACCCCA AGCTTTTAGC 
ATGGAGCAGG CCCTGCAAGA TGCAGAGGCA AGGCTCGAGA AGACCGTCCA GCGCGGCCAG
ATTGTCACCG GCACCGTGGT GCTCGTCACC AACGACGGTG TGATGGTAGA CATCGGGGCG
CGCACCGAAG CCGTTATTCC GTTCAACCAG CTCACCGAGG AGAACCTGTC GGAAGAGGAG
CTCAAGAATC TCCTCAAGCC AGGCGACACC GTGACTGCTT ACGTGGTTCG GGCCGACCTC
GAGAACGGCC AGGTGGTGCT CTCCAAAAAG CGGGCCGAGG CCGATCAGAG CTGGGTCAAG
ATCCAGGCCC TCTACGAGCA GGGCGAGCCG GTAATGGTGC AGGTTAAGGA AAAGGTCAAA
GGGGGTCTGG TAGCGACCAT TGAAGGCCTT CGCGCTTTCC TGCCGGCCAG CCAGGTAGAT
CTGAAGCGCA CCCCCGATCT CGACGAGTAC GTAGGCCAGA GCTTTTTGGT CAAAATCATC
GAGCTTAACC GCAAAAAAGG CCGGATCATC CTGTCGCGCC GTACGGTGCT GGAAGCCGAG
CAAAAAGCGG CCCGGAGCCA GGTGCTGGCC AGCCTGAAAG AAGGCGAGGT GGTCGAAGGC
CAGGTGGTTG AGGTCACCGA TTTTGGCGTG TTTGTGGCTT TGGGCGGCGT GGATGGCCTG
GTGCACCGCA GCGAAATTAC CTGGGGCCGC TTCAATCATC CCAGGGATGT GGTGCAGAAG
GGCCAGACCG TCAAAGCCAA GGTGCTTTCG GTGGATACCG AGCGTGAACG GGTCAACCTC
TCGATGAAGG CCCTCACCCA GGATCCCTGG CTGACCGTCT CCGAAAAATA CCCTGTGGGC
TCCAGGCTCA CCGGCAAGGT GGTCGGTCTA ACCCAGTTCG GGGCCTTCGT GGAGGTGGAA
CCCGGCCTCG AGGGTCTCAT TCACATCTCC GAGCTGTCCT GGACCAAGCG CCCCAAGCAC
CCTGGCGAGA TCCTGAAGGA GGGCCAGGAA GTAGAGGCCC AGGTTCTGCG CATCGACCCG
GAGGAGCGCC GGCTCTCGCT GGGCCTAAAG CAGACCCAGC CCGACCCCTG GAAGAGCCTG
CCCGACCGCT ACCCCCCGGG TACGCCGGTC AAGGGCAAGG TCACTGGCCT CACCGACTTC
GGGGTGTTTG TGGAGATCGA GCCGGGCATC GAGGGCCTGA TTCACGTCTC CGAGCTGGCC
TACGAGCGCG TCGAGAAGCC TTCCGAGATC TTCAAGAAGG GCGACGAGGT GGAGGCGGCC
ATCCTCCAGA TTGACCCGGT GGAGCAGCGC ATCAGCCTCT CGCGCAAACG CCTGCTACCT
CCCCCGGCCC ATGCAGTTAG CATCCCTGGC GGGGAGGAAG GCGAGGGTCG CAAGGGCCGC
CGCGAGGGCA AGGAAGGCGA GCGCCCCAAG CGTTCGAAGG GCAAAGGTGG GGCCCGCGAA
GGGCGCGGCC GCGACCACGA CTACGACTAC GGCATGGGTG GCGGGGCTGC CTCCTATACC
AACTACGACC CCAGCGTGGT TGCTACCTCC AACACCAACG TTAAGCTTGG CGATGTGTTC
GGCGATCTCC TAAGCCAGAT TGCCTTGGAA GAGGACAAAG ACAAAGAAAA GGCCTAA
 
Protein sequence
MEDQATQTPV ETGKEPQAFS MEQALQDAEA RLEKTVQRGQ IVTGTVVLVT NDGVMVDIGA 
RTEAVIPFNQ LTEENLSEEE LKNLLKPGDT VTAYVVRADL ENGQVVLSKK RAEADQSWVK
IQALYEQGEP VMVQVKEKVK GGLVATIEGL RAFLPASQVD LKRTPDLDEY VGQSFLVKII
ELNRKKGRII LSRRTVLEAE QKAARSQVLA SLKEGEVVEG QVVEVTDFGV FVALGGVDGL
VHRSEITWGR FNHPRDVVQK GQTVKAKVLS VDTERERVNL SMKALTQDPW LTVSEKYPVG
SRLTGKVVGL TQFGAFVEVE PGLEGLIHIS ELSWTKRPKH PGEILKEGQE VEAQVLRIDP
EERRLSLGLK QTQPDPWKSL PDRYPPGTPV KGKVTGLTDF GVFVEIEPGI EGLIHVSELA
YERVEKPSEI FKKGDEVEAA ILQIDPVEQR ISLSRKRLLP PPAHAVSIPG GEEGEGRKGR
REGKEGERPK RSKGKGGARE GRGRDHDYDY GMGGGAASYT NYDPSVVATS NTNVKLGDVF
GDLLSQIALE EDKDKEKA