| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aboo_1327 |
|---|
| Symbol | |
|---|
| ID | 8828289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aciduliprofundum boonei T469 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013926 |
|---|
| Strand | - |
|---|
| Start bp | 1269201 |
|---|
| End bp | 1269716 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | |
|---|
| Product | 2'-5' RNA ligase |
|---|
| Protein accession | YP_003483697 |
|---|
| Protein GI | 289597001 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.243857 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACAT TCATAGCCAT TGAAATTCCG TTCTTTAGAG AGATTGAGGA ATTGCAAAAA
AGCATAGAGG GCAGGGCAAA ATTGGTAGAA GAGGAGAATA TGCACATAAC CCTGAAATTT
TTGGGAGAGA TAGAGGAAAA ATTAATAGAA AAAATAAAAA AAATCGTGGA AGAGTGTAAA
GTGGATAAGT TTAAAATATC CTTGCAAGGC GTTGGTTTTT TCCCAAATGA GAGATACATT
AGGGTAATTT GGATCGGCAT TGATGGCTAC GAGCCCATAG TCAAAATGGC AAAATGCATA
GATGAGAAAC TATCCAAGCT TGGATTTGAG AGAGAGAAAG GCTATGTACC TCATCTCACT
GTGGCTAGGG CAAAGGGGAG AGTATCCATA ATGAATTATG ATAGATTCAA AAATTTGAAA
TTTGGGGAAG TGGATGTCAG AGAGGTAAAA ATAAAAAATA GCACACTAAC TCCCAAAGGG
CCAATTTACG AGGATGTCGC AGTTATTCAA CTGTAA
|
|---|
| Protein sequence | MRTFIAIEIP FFREIEELQK SIEGRAKLVE EENMHITLKF LGEIEEKLIE KIKKIVEECK
VDKFKISLQG VGFFPNERYI RVIWIGIDGY EPIVKMAKCI DEKLSKLGFE REKGYVPHLT
VARAKGRVSI MNYDRFKNLK FGEVDVREVK IKNSTLTPKG PIYEDVAVIQ L
|
|---|
| |