| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_2176 |
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| Symbol | |
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| ID | 8807951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. K90mix |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013889 |
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| Strand | - |
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| Start bp | 2288013 |
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| End bp | 2292092 |
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| Gene Length | 4080 bp |
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| Protein Length | 1359 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_003461402 |
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| Protein GI | 289209336 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.638444 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCTCA GTTATACCGA AAAGAAACGT ATCCGCAAGG ACTTCGGGAA ACGTCCCCAG
ATCCTGGACG TCCCGTATCT GCTGGAAACC CAATTGACCT CCTATCGGGA TTTCCTGCAG
GCCGAAAAGG GTCCGGAGGC GCGTCACGCG TTGGGCCTGC ACGCGGCGTT TCAGTCGGTG
TTCCCGATTG TTAGCTATTC CGGTCATGTC CAGCTCGAGT ACGTCAGCTA CCGCTTGGGC
GAGCCGCTGT TCGATGTGAA GGAATGCCAG ATCCGTGGCG TGACTTACGC GGCCCCGCTG
CGTGTCCTGC TGCGTCTGGT GATCCACGAC AAGGAGGCCC CGGCCGGCTC CACCGTGGTG
AAGGAGGTCA AGGAGCAGGA GGTCTACATG GGCGAGATGC CGCTCATGAC CGAGAACGGG
ACCTTCGTGA TCAACGGTAC CGAGCGAGTG ATCGTCTCCC AGTTGCATCG TTCGCCCGGC
GTGTTCTTCG ACAGCGACCG TGGCAAGACC CAGGGCAGCG CCCAGAAGCT GCTCTACAAC
GCACGCATTA TTCCGTACCG CGGTTCCTGG CTGGACTTCG AGTTCGATGC CAAGGACGGG
GTGTACGTGC GTATCGACCG TCGCCGCAAA CTGCCGGCGT CGATTCTGCT GCGTGCGCTG
GGCATGGATA CCGAAGAGAT CCTGTCCACC TTTTTTGAAT TCAACCAGAT CACGCTCGAT
GAAGACGGCG GTGAACTGGA CCTGATCCCC GAGCGCCTGC GCGGCGAGAC CGCCGTGGTC
GACATCACCG ACGGCAAGAA CGTGATCGTC GAGGCCGGGC GCCGGATTAC CCCGCGGCAT
ATCCGCGAGA TCGAAAAGGC CGGCATCAAC CGCCTGCGCG TGCCGGACGA GTACCTGCTC
GGCCGCGTGC TGGCCAAGGG CGTAGTCGAC GAGTCGACCG GCGAGCTGAT GGCGGCCGCC
AACGATCCGC TGACCCAGGA ACTCCTGGAC AAGCTGCGCG CCGAGGGCGT GAAGTCGGTG
GAGACCATCT ACACCAACGA CTATGACCAT GGCCCGTTCA TGTCGGACAC CCTGCGTCTG
GATCCGACCA AGACGCAGTT GGAGGCCCAG GTCGAGATCT ATCGCGTGAT GCGCCCCGGC
GAGCCGCCGA CCAAGGACGC CGCCGAGAAC CTGTTCTCCA ACCTGTTCTT CTCCGAGGAC
CGCTACGACC TGTCGGCCGT CGGCCGGATG AAGTTCAACC GCCGTGTCGG ACGCGATACC
GACGAGGGCC CGGGTGTGCT GTCGCCCGAG GACATCCTCG ACGTGCTGAA GGTCCTGATC
GACCTGCGTA ACGGCAACGG TCGCACCGAC GATATCGATC ACCTGGGCAA CCGCCGCATC
CGCAGCGTGG GCGAGATGGC CGAGAACCAG TTCCGTCTGG GTCTGGTGCG CGTCGAGCGT
GCGGTCAAGG AGCGCCTGAC GGTCGCCGAG AGCGAAGGCC TGATGCCGCA GGAGCTGATC
AACGCGAAGC CGGTGGCGGC CGCGGTCAAG GAGTTCTTCG GTTCCAGTCA GCTGTCGCAG
TTCATGGACC AGAACAATCC GCTGTCCGAG GTGACTCACA AGCGCCGTAT CTCCGCGCTG
GGCCCGGGCG GCCTGACCCG CGAACGCGCG GGCTTCGAGG TGCGCGACGT ACACCCGACC
CACTACGGTC GTGTCTGCCC GATCGAGACG CCGGAAGGTC CGAACATCGG CCTGATCAAC
TCGCTGGCCG TGTATGCCCG CACCAACCGT TACGGCTTCC TGGAGACCCC GTACCGCAAG
GTCGAGGACG GCAAGGTCAC CGATGAGATC GTGTATCTGT CCGCGATCGA GGAAAGCCAG
TACGTGATCG CCCAGGCGAA TGCGGCGATG GACGAGCAAG GGCGTCTGAC CGACGACCTG
GTCTCCTGCC GCTTCCAGGA GGAGTTCACG ATCTCCTCGC CGGACAAGAT CCAGTACATG
GATATCTCGC CGAAGCAGAT CGTGTCCGTG GCGGCCGCGC TGCTGCCGTT CCTGGAGCAT
GACGATGCCA ACCGCGCCCT GATGGGTGCG AACATGCAGC GTCAGGCGGT GCCCTGCCTG
CGTGCGGACA AGCCGCTGGT CGGGACCGGT ATCGAACGCA CCGTGGCGAT CGACTCCGGG
TCCGCGATTG TCGCCAAGCG CGGCGGTACG GTCGATTCCG TGGACGCCGC CCGCGTGGTG
GTGCGCGTGA ACGACGACGA GACCGTCGCC GGCGAGCCAG GCGTGGATAT CTACAACCTG
ACCAAGTACT CGCGTTCCAA CCAGAACACC AGCATCAACC AGCGTCCGCT GGTCGCGGTG
GGCGACGAGA TCGCCCGCGG CGACGTGCTG GCCGATGGGT CCTCGACCGA TCTCGGCGAG
CTGGCCCTGG GGCAGAACAT GATGGTCGCG TTCATGCCCT GGAACGGCTA CAACTTCGAG
GATTCCATCC TGATCTCCGA GCGCGTGGTG CAGGAAGACC GCTACACCAC GATCCATATC
GAGGAGCTCA ACTGTGTCGC GCGTGACACC AAGCTGGGCC AGGAAGAGAT CACCGCGGAT
ATCCCGAACG TCTCCGAGTC GCTGCTGGCC AAGCTGGACG AGTCCGGTGT GGTCTATGTC
GGTGCCGAGG TGAACCCGGG CGACATCCTG GTGGGCAAGG TCACGCCGAA GGGCGAGACC
CAGCTGACCC CGGAAGAGAA GCTCCTGAGG GCCATCTTTG GCGAGAAGGC CTCGGACGTG
AAGGACACCT CCCTGCGTGT GCCGTCCGGC ATTGAGGGCA CGGTGATCGA CGTACGCGTG
TTCACCCGCG ACGGCGTGGA GAAGGACGCG CGCGCCAAGT CGATCGAGGA AGACGACCTC
GCCGCGGTCA AGAAGGACCT GAAGGACCAG CTGCGTATCT ACGAGGACGA CATCTACGCA
CGAGTGGAAA AGCTGCTGGT CAACAAGGCC GCCGCCGGTG GTCCCGAAGG GCTGGGCGAT
GGCTCCAAGG TCACCAAGAA GTACCTGCAG GGACTGTCCC GCGACCAGTG GTTCGAGGTG
CGCCTGAAGG ACGACGCCGT GAACTCTCAG CTGGAGGACC TCGGTCGCCA GCTGCAGGAG
CAGCACGAGC TGTTCGACAA GAAGTTCGAG CACCAGAAGG CGAAGGTTGC CGCGGGCGAC
GACCTGCCGC CGGGCGTGCA GAAGATGGTC AAGGTCTACG TGGCCGTGAA GCGTCGTCTG
CAGCCGGGCG ACAAGATGGC CGGCCGCCAC GGGAACAAGG GCGTCATCTC GATGATCGTG
CCGGAAGAGG ACATGCCGTT CCTCGAGGAC GGGACCCCGG TGGACGTGGT CCTGAACCCA
CTGGGCGTTC CCTCGCGCAT GAACGTCGGG CAGGTGCTGG AGGTTCACCT CGGGTGGGCC
GCGAAGGGCC TGGGCGACAA GATCAACCGC ATGCTCGAGG CGCAGGCCGA GATCGCGAAG
CTGCGCGAGT TCCTGGACAA GATCTACAAC CACCGCGACA AGAAGGTCGA TCTCGACTCC
ATGTCGGACG CCGAGATCAT TGCGCTTTGC CGCAACCTGC GCGGTGGCGT GCCGATGGCG
ACGCCGGTGT TCGACGGTGC CGAGGAGGCC GAGATCAAGG AGATGCTGCG TCTGGCCGAT
CTGCCCGAGA CGGGGCAGGC CGAACTGTTC GACGGGCGCA CCGGTGACTC CTTCGATCGT
CCGGTGACCG TCGGCTACAT GCACATGCTG AAGCTGAACC ACCTGGTCGA CGACAAGATG
CATGCGCGCT CGACCGGCCC GTACTCGCTG GTGACCCAGC AGCCGCTGGG CGGCAAGGCG
CAGTTTGGTG GCCAGCGCTT CGGCGAGATG GAGGTCTGGG CGCTGGAGGC CTACGGCGCT
GCCTACACCC TGCAGGAGAT GCTGACGGTG AAGGCGGACG ACGTGCAGGG CCGCAACAAG
ATGTACAAGA ACATCGTCGA CGGCGAGCAC CACATGGAGG CCAACGTCCC CGAGTCGTTC
AACGTGCTTA TGAAGGAGAT CAAGGCGCTC GGCATCAATA TCGAGCTGGA GCAGGACTGA
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| Protein sequence | MALSYTEKKR IRKDFGKRPQ ILDVPYLLET QLTSYRDFLQ AEKGPEARHA LGLHAAFQSV
FPIVSYSGHV QLEYVSYRLG EPLFDVKECQ IRGVTYAAPL RVLLRLVIHD KEAPAGSTVV
KEVKEQEVYM GEMPLMTENG TFVINGTERV IVSQLHRSPG VFFDSDRGKT QGSAQKLLYN
ARIIPYRGSW LDFEFDAKDG VYVRIDRRRK LPASILLRAL GMDTEEILST FFEFNQITLD
EDGGELDLIP ERLRGETAVV DITDGKNVIV EAGRRITPRH IREIEKAGIN RLRVPDEYLL
GRVLAKGVVD ESTGELMAAA NDPLTQELLD KLRAEGVKSV ETIYTNDYDH GPFMSDTLRL
DPTKTQLEAQ VEIYRVMRPG EPPTKDAAEN LFSNLFFSED RYDLSAVGRM KFNRRVGRDT
DEGPGVLSPE DILDVLKVLI DLRNGNGRTD DIDHLGNRRI RSVGEMAENQ FRLGLVRVER
AVKERLTVAE SEGLMPQELI NAKPVAAAVK EFFGSSQLSQ FMDQNNPLSE VTHKRRISAL
GPGGLTRERA GFEVRDVHPT HYGRVCPIET PEGPNIGLIN SLAVYARTNR YGFLETPYRK
VEDGKVTDEI VYLSAIEESQ YVIAQANAAM DEQGRLTDDL VSCRFQEEFT ISSPDKIQYM
DISPKQIVSV AAALLPFLEH DDANRALMGA NMQRQAVPCL RADKPLVGTG IERTVAIDSG
SAIVAKRGGT VDSVDAARVV VRVNDDETVA GEPGVDIYNL TKYSRSNQNT SINQRPLVAV
GDEIARGDVL ADGSSTDLGE LALGQNMMVA FMPWNGYNFE DSILISERVV QEDRYTTIHI
EELNCVARDT KLGQEEITAD IPNVSESLLA KLDESGVVYV GAEVNPGDIL VGKVTPKGET
QLTPEEKLLR AIFGEKASDV KDTSLRVPSG IEGTVIDVRV FTRDGVEKDA RAKSIEEDDL
AAVKKDLKDQ LRIYEDDIYA RVEKLLVNKA AAGGPEGLGD GSKVTKKYLQ GLSRDQWFEV
RLKDDAVNSQ LEDLGRQLQE QHELFDKKFE HQKAKVAAGD DLPPGVQKMV KVYVAVKRRL
QPGDKMAGRH GNKGVISMIV PEEDMPFLED GTPVDVVLNP LGVPSRMNVG QVLEVHLGWA
AKGLGDKINR MLEAQAEIAK LREFLDKIYN HRDKKVDLDS MSDAEIIALC RNLRGGVPMA
TPVFDGAEEA EIKEMLRLAD LPETGQAELF DGRTGDSFDR PVTVGYMHML KLNHLVDDKM
HARSTGPYSL VTQQPLGGKA QFGGQRFGEM EVWALEAYGA AYTLQEMLTV KADDVQGRNK
MYKNIVDGEH HMEANVPESF NVLMKEIKAL GINIELEQD
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