| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_1878 |
|---|
| Symbol | |
|---|
| ID | 8807651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 1993610 |
|---|
| End bp | 1995385 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | succinate dehydrogenase or fumarate reductase, flavoprotein subunit |
|---|
| Protein accession | YP_003461105 |
|---|
| Protein GI | 289209039 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.178355 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGA CGCGGCGCAA ATTCGACGCG CTGATCATCG GCGCCGGCGG CGCGGGCCTG
CGTGCCGCGC TGCAGCTGTC CAACGGCGAT GCCAAGGTGG CGGTGGTCTC CAAGGTGTTT
CCCACGCGCT CGCATACGGT GGCCGCGCAG GGCGGCGTGA ACGCCGCCCT GGCCAACGTG
CTGCCGGACT CCTGGCACTG GCATATGTTC GACACCGTGA AGGGATCGGA CTATCTGGGC
GATCAGGATG CGATCGAGTA CATGTGCCGC GCCGCATCCA AGGTGGTCTA CGAGCTGGAT
CACTTCGGCG TGCCGTTCTC GCGTCTGGAC AACGGCAATA TCTATCAGCG CGCCTTTGGC
GGGCAGAGCC AGAACTTTGG CCAGACCCAG GCGGCGCGTA CCTGTGCGGC GGCTGACCGG
ACCGGGCATG CGATCCTGCA TTCGCTGTAC CAGCAGAACC TGCGTGCTCG CACGCATTTT
TTCGACGAGT ACTTCGCGGT GGACCTGCTG CGTGACGAAC AGGGTTTCGT GCTCGGTGTG
CTGGCCTTCG AGATCCTGAC CGGCGAGCCG ATCGTGATCG AGGCGAAGAC CACGCTGATC
GCCACCGGCG GGGTGGGGCA GCTGTTCCGC ACCACGACCA ACGCGCTGAT CAACACCGGC
GACGGGATGG CGATGGCGCT GCGCGCCGGG GTGCCGCTGG AGGACATGGA GTTTGTCCAG
TTTCACCCGA CGGGGATCGC CGGGCGCGGG ATGCTGATTA CCGAGGGCGC ACGCGGCGAG
GGCGGCTACT TGATCAACTC CGAGGGCGAG CGCTTCATGG AGCGCTATGC CCCGCGGGCG
AAGGACCTGG CCTCGCGCGA CGTGGTCAGC CGCTCCATCG CCACCGAGGT GCGCGAGGGC
CGCGGCTGCG GGCGCAATGC GGACCATGTG CTGCTGGATC TGCGCCATCT GGGCGCGGAC
ACGATCATGC AGCGCCTGCC GGGCATCCGC GAGACCAGCA TGACCTTCCT CGGCGTGGAC
CCGATCGAGG CCCCGATCCC GGTGTTCCCG ACCTGCCACT ACAGCATGGG CGGCATCCCG
ACCAACCGCT TCGGGCAGGT GGTCGCGCCG GTCAAGGACA CCCCGGAGGA CCCGGTGCCG
GGGCTGTACG CGGCCGGGGA GGCCGCCTGT GTCTCCGTTC ATGGGGCCAA CCGCCTGGGC
GGCAATTCGC TGCTGGACAT CCTGGTGTTC GGGCGTGCGG CGGCCAACCA TATCCTCGAA
TACCTGCGCG AGAACCACTA CCACCGGCCG CTGGACGAGA CGGCGGTGGA GCAGGCGATG
GCACGACTGA CGCGCTGGGA CCGCAAGGAC CCGGGCGACG GCTCCGCCGA GCAGGTCGAA
CCGCTGAAGC GCGAACTGCG CAAGGTGATG GAGGACCACT GCTCGGTGTT CCGAACCGAC
GAGGTGATGC GCGAGGGGGT GGAGAAGGTC CGTGCCCTGC GCGAGCGCCT GGATCACGCG
GTGATCGCGG ACCACTCGGC CACCTTCAAC ACCGCCCGGG TGGAGGCGAT GGAGCTGGAG
AACCTGATGG ATTGCGCGAT CGCCACCATC CGCTCTGCGC TGGGGCGCGA GGAGAGCCGC
GGGGCGCATT CGCGTATCGA CTTCCCCGAG CGCGACGATC AGCACTGGCT CAAGCACAGC
CTGTACTCGC TGGCGGACGA CAGCCTCGAC TACAAGCCGG TGCGCACACA GCCGAACACC
GTGCCCTCGT TCCCGCCGAA GGAGCGGGTG TACTGA
|
|---|
| Protein sequence | MNLTRRKFDA LIIGAGGAGL RAALQLSNGD AKVAVVSKVF PTRSHTVAAQ GGVNAALANV
LPDSWHWHMF DTVKGSDYLG DQDAIEYMCR AASKVVYELD HFGVPFSRLD NGNIYQRAFG
GQSQNFGQTQ AARTCAAADR TGHAILHSLY QQNLRARTHF FDEYFAVDLL RDEQGFVLGV
LAFEILTGEP IVIEAKTTLI ATGGVGQLFR TTTNALINTG DGMAMALRAG VPLEDMEFVQ
FHPTGIAGRG MLITEGARGE GGYLINSEGE RFMERYAPRA KDLASRDVVS RSIATEVREG
RGCGRNADHV LLDLRHLGAD TIMQRLPGIR ETSMTFLGVD PIEAPIPVFP TCHYSMGGIP
TNRFGQVVAP VKDTPEDPVP GLYAAGEAAC VSVHGANRLG GNSLLDILVF GRAAANHILE
YLRENHYHRP LDETAVEQAM ARLTRWDRKD PGDGSAEQVE PLKRELRKVM EDHCSVFRTD
EVMREGVEKV RALRERLDHA VIADHSATFN TARVEAMELE NLMDCAIATI RSALGREESR
GAHSRIDFPE RDDQHWLKHS LYSLADDSLD YKPVRTQPNT VPSFPPKERV Y
|
|---|
| |