Gene TK90_0816 details

Gene Information

• Locus tag: TK90_0816
• ID: 8806571
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thioalkalivibrio sp. K90mix
• Kingdom: Bacteria
• Replicon accession: NC_013889
• Strand: -
• Start bp: 872055
• End bp: 875456
• Gene Length: 3402 bp
• Protein Length: 1133 aa
• Translation table: 11
• GC content: 66%
• Product: transcriptional activator domain protein
• Protein accession: YP_003460067
• Protein GI: 289208001

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.437222
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 39
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCGCGCAC TCCAGGATCT CCCCGAGCTC GCCGCCTGGG CACAGACACA GCGCGACCAC 
TACTGGTCCC AGCTGCTCCT TCTGATCGAG GAAAATCTCG ACGTTCTCTG TCATTCCTCA 
GACGCCGAGG CCCTGCTCAC CGAGCTCCAG CGCCTGGTGG CGATGGAGCC CCACGAAGAG 
GCTCTGCACC GTCTGGTCAT GCTGACCCTG GCCGGCATGG GTAACCGCGA GCGGGCGCTG 
GAACACTTTG GCCGCCTGGA GCGCCAGGCG GTCGATGGCC CTGGTCAGTT ACTGGTGCGA 
ACCCGCGACG AAATCCTGGT CCCAACACCA AAGGCACCGG CCACGGTGTC TCCGACTGCC 
ACACCCGAGA CAGCCTCCCT GCGTGCCGAG CGCCGCCGGG TCACCGTCGT GGCCTGCCTT 
GTCCAGGCGG ACTCCGACCT TGACGTAGAG CTGCAGCATG AACGCATGCA ACACACGCTG 
GAGCAACTGG ACCTGGTCTT GCTGAACCAT CGGGGCCATG TCGTTCGGGC CCCTGGCTGC 
GGCCTCCTCG CCTATTTTGG CTATCCTGCA GGACGCGAGC AGGCCACTGT CGATGCCGTC 
CACGCCGCCT GGCAAGTCCT GCAGACAGCA CCAAGCGACT GTCAGCTGCG CATAAGCGTC 
GATACCGACC TCATCGTAAC AGGGGTCGAC CCGGACACCC CCGACCCCGC TGGCCAGCTC 
AGCCAGCGCG CGCAGGCTCT GGCGCGTTCG ACCGACACGG GAACGCTCGT GGTCTCTCCA 
TCCGTGCACC AGCGCGTCTC GGGATATTTT CTCTTCAGCC CTCACGCGGG CACGGGAGCA 
CCCGAAGGAA GCCAGCGCGT CACGGGCGAC CCCGGCCCCC TGGATCGTGT CGATGCCCAG 
CACGCCCGAG GTGGCCTCAC CCCCCTGGCG GGACGCACAG AGGAGCTTGA GCGCCTGCAC 
CAAATCTGGC GCCAGACACT CAAACATCAC AAGCCGCACT TTGTACTGAT CCAGGGTGAA 
GCCGGACTGG GCAAGAGCCG TCTCGCACGA CACCTCGACG AGCGCATCCG CGGCCAGGCG 
CGCTCGCGCT TCCTGCTGAA GTGCCGCGAG GACCGCTCGC GGCACTTGTT GGCGCCCGTG 
CGTCAGGCGT TCGCCACCTG GCTTGGACTC GGCAGCATGA ATGCCAGCCG CCAGCGGCGA 
CTGGCACGGG TCCTCGGCAC CGCTCGCTCA CTCGATGCGG ACATCGCCGA CGCCCTGGCG 
CACTGGCTCA CACACCCGGA CAGCAACGGG CTCGAAGCGC TGGCCGCGCA GGGACTCGAC 
CGGGATCACA TCATTGATGT CCTCGTCGAG CTCGCCCGGC GCCGAGCCCG CCGAGGCCCC 
CTCCTGCTGA TCTGTGACGA CCTGCACTGG ATGGATTCCG GCACGGCCGA ATTCCTTCGA 
CGCCTGTATC AGCGCCTGCA TGACCGCCCG TTGCTGACCC TGCTCACGGC CCGCATGAGC 
TTTCGCTCCA ACTGGCGCGA TGTCCCGCTT GAGCATCTGC GACTGCACGC CCTGCCCGAC 
CAGGCTGCAC ATGAACTCAT CGAGCGTTGC GACACCCGGC ATCGCCTGAC GAAACACCTG 
CGCGCGCAAC TCATCGAACG CGGCGAGGGC GTCCCGCTTT TTCTCGAGGA GCTGACGCGC 
TACACCCTCG AAGCCGCGCG CACGGGGACC CTCCCCGACA CCTTGCCGCC CGGGCTGGCC 
AATCTGCTGG TGGCACGCCT GGAACAAACC GGGACCGCGC GGGATTTGGC CCACGCCGCC 
GCCGTAATCG GACGCGATTT TGATACACGC ATCCTGAGTC ACCTCCTGGA GCAGCCAGCC 
GACACGATCC GCCGCCAGCT CAGCCGCCTC ACGGGCCGCG GGTTCGTCGA GCCGGTCGGC 
GTCCTGGACG GTGTGCGCTA CCGTTTCCGT CACGCCCTAT TCCAGCAGGC TGCCTACGAA 
TCCATGCTGG TGGCCGAACG AACGCGTCTT CACGGCCGCC TGGCGGATCT CCTGCGTGAC 
GATCAAGGCA CGAGCAATAT CGACTGGGGC CAGGTGGCCA GCCATCTTTA TCACGCCGGA 
CGTGTGGACG AGGCCGTGCC CGCCTGGCTC GAGGCGGGAG AGGCGGCGTT CGCCCGGGGC 
ATGCTGCTGG AGGCATCACA CTACTTCGAA GATGCCCTCA GCTGTCTCGA TCGCGAGCTA 
GGCGACCGGG AACCCTCGGA AGAACGCGAC GCGCAGACGC AGCGAGCTCT GGGCGGACTG 
GGTGCCTCAA ACCTCGCCCT GTTGGGGTAC GGCTCCCGCA CGGTCCACGC GATCTTCGAA 
CGCACCTTGG GCATCACCGC GCCTCAGCGA GATGCGGTGC AGTACTTCCG TGTGCTCTGG 
GGCCTTTGGC ACGGCGCCGG ATCCTGGCAC GGCTTTGATG AAGCCCACCG ACTGGCCAAC 
GACATGGAAC AGGTCGCAGA GCAGTCGAAC GACCGCCTGC TACGAATCGC CGCACACTAC 
GTACAAGGCA ACACGCACTT CTGGAGTGGC CAGCTACCGC TGGCGCTGGA ACACCAGACC 
CAGGCGCTCG CCCTGTACCG CGAAGACGAC CACCCGCACC TGGTCGCGCG CCACACCGAG 
AACCCCGCGA TCAGCTCACG CGGCTTCATG GCCTGGACGC TCCTCTTCTT CGGCAACCAC 
GCTCGCGCGT GGGAGGAAAT GGATGCGGCC TGCGCCGAGG CCGCAGCGCT GGAGCACCGC 
CCCACAGAGG CCTTTGTATA CGCCTTCCGG GCAGCGCTTG GCTTCTTCGC CGACGACCCT 
GACGAAGCCC TGACCTCCGC CCGCCGCGCG CTCGCGATTG CCGAGGACTA TGACTATCCC 
CTCTGGCGGG CCTCAGGCCT GGCACTACAG CACTGGGCCC TGGCGCGCCA GGGCGACACC 
TCGGCCGTGG CACCACTCCG GGAACAGGCA GACGCATTGC GCCACATCAT GGATGGCGTC 
AGCACCATCT TTCAGCTCTT CCTGCTCGAC GCACTGCATG CAACCGGAGC CAAGCCTTCT 
GAGCGTCTGC AGATCGCCAC CGCTACACTG ACCAACTGCC TGAAACGAGG CGACCACGGC 
TTCGAGCCCG CAATCCGGCG ACTGCGTGCC CATGCGCTGC TGGAACACAG CGACGGCACC 
GACAACGAGG GTTGGCAGGA GCTGGAGCGG GCACGCCGTC TGGCCCACGA CCACGGCAAC 
CCGAATATCG AACGATTAAC CCTGCTCGAC TATGCCCGCT TTGCTCGCGA TGACGTCTGG 
CGCCAGTGGA GCGAACGCGA ACTCCTGCGC ATCAACCACT GCATCATCCC CCGACGACAC 
CCATCCGAGC AGGCGCTGCA GCAGAACCCG CGGCTCGCCT GA 

 

Protein sequence

MRALQDLPEL AAWAQTQRDH YWSQLLLLIE ENLDVLCHSS DAEALLTELQ RLVAMEPHEE 
ALHRLVMLTL AGMGNRERAL EHFGRLERQA VDGPGQLLVR TRDEILVPTP KAPATVSPTA 
TPETASLRAE RRRVTVVACL VQADSDLDVE LQHERMQHTL EQLDLVLLNH RGHVVRAPGC 
GLLAYFGYPA GREQATVDAV HAAWQVLQTA PSDCQLRISV DTDLIVTGVD PDTPDPAGQL 
SQRAQALARS TDTGTLVVSP SVHQRVSGYF LFSPHAGTGA PEGSQRVTGD PGPLDRVDAQ 
HARGGLTPLA GRTEELERLH QIWRQTLKHH KPHFVLIQGE AGLGKSRLAR HLDERIRGQA 
RSRFLLKCRE DRSRHLLAPV RQAFATWLGL GSMNASRQRR LARVLGTARS LDADIADALA 
HWLTHPDSNG LEALAAQGLD RDHIIDVLVE LARRRARRGP LLLICDDLHW MDSGTAEFLR 
RLYQRLHDRP LLTLLTARMS FRSNWRDVPL EHLRLHALPD QAAHELIERC DTRHRLTKHL 
RAQLIERGEG VPLFLEELTR YTLEAARTGT LPDTLPPGLA NLLVARLEQT GTARDLAHAA 
AVIGRDFDTR ILSHLLEQPA DTIRRQLSRL TGRGFVEPVG VLDGVRYRFR HALFQQAAYE 
SMLVAERTRL HGRLADLLRD DQGTSNIDWG QVASHLYHAG RVDEAVPAWL EAGEAAFARG 
MLLEASHYFE DALSCLDREL GDREPSEERD AQTQRALGGL GASNLALLGY GSRTVHAIFE 
RTLGITAPQR DAVQYFRVLW GLWHGAGSWH GFDEAHRLAN DMEQVAEQSN DRLLRIAAHY 
VQGNTHFWSG QLPLALEHQT QALALYREDD HPHLVARHTE NPAISSRGFM AWTLLFFGNH 
ARAWEEMDAA CAEAAALEHR PTEAFVYAFR AALGFFADDP DEALTSARRA LAIAEDYDYP 
LWRASGLALQ HWALARQGDT SAVAPLREQA DALRHIMDGV STIFQLFLLD ALHATGAKPS 
ERLQIATATL TNCLKRGDHG FEPAIRRLRA HALLEHSDGT DNEGWQELER ARRLAHDHGN 
PNIERLTLLD YARFARDDVW RQWSERELLR INHCIIPRRH PSEQALQQNP RLA