| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0621 |
|---|
| Symbol | |
|---|
| ID | 8806370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | + |
|---|
| Start bp | 660243 |
|---|
| End bp | 662423 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | capsular exopolysaccharide family |
|---|
| Protein accession | YP_003459872 |
|---|
| Protein GI | 289207806 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.242447 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.136345 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAGA ACCATTCCCC CGGGGTGCCG GAAGGCGAAC TGGATATTGG CCGACTGCTT
GGCCAGTTGC TGGACCACAA GTGGCTGATC ATTTTTATCA CGGCGCTGTT TGCTATTGCG
GGCGCGGTAT ACGCGACGCT GTCCACCCCG ATCTACCGGG CGGATGCGCT GGTGCAGGTG
GAGGACATGG GACGCTTCAG CAGCCCGTTG TCCAGTGTGC GCGAGATGCT GGGGCAGGAG
CCGCGCGTCG AGGCCGAGCT GCAGATCCTG CGTTCACGCA TGGTCCTCGG CCGCACGGTC
GATCAGGAGG CGCTGGATCT GGTGGTACGC CCGCACCGTA TGCCGGTGGT GGGCGATTAC
CTCGTTCGCC GGGGCGTGGA GCGCCCCGCC TTTGCTCAGT CCAGTGTCTG GGCGGGCGAA
TCGATCAACG TGGGCGAGTT CCAGGTGGCC CGAGCCTACG AGGGGCGCAC CTTTACGCTG
GAGGTTCTGG ATGACGATCG TTATCGCCTG ATCAACGGGG ATCATGAACT GGGCGAGGGG
CGTATTGGCG AGGACGTGGA GTTCTTTGAG GGTGATGTAC GCCTGCGTGT GGCCGAAATG
GATGCGGGGC CGGGGGCGCG TTTTGATATC CAGCGGCGCT CGCGCCTGGC GGCGATCAAC
AGCTTGCGTG GTCAGTTCGA GGCGGGGCAG CAGGGCCGCG AGAGTGGCGT GTTCAGCCTG
ACCCTGACCG ATCCGGACCC GCAGCAAGCC CAGCGCATCC TGAACACCAT CAGCCAGATC
TATCTGACCC AGAACGTCCA GCGCAAGGCC GCCGAAGCCG AGAAGAGCCT CGAATTCCTG
GAGGAGAAGG TGCCGGATGT GCGCGATCAG CTGCAAACGG CCGAGGATGC GCTGAACGAG
TACCGCACAG AGCGCGACAG CGTGGACCTC TCGCAGGAGA CCCGTGCCGT GCTGGACCGC
CTGGTCAACC TGGAACGTCA GCTCAACGAG CTGGAGTTCG AGGAGGCCGA GATCTCCCGG
CGGTACACGC CCAGCCATCC GACCTATGCG GCCCTGATCG ACAAGCGCCA GAAGCTGCAG
GAGGAGCGCA ACCGGCTGAA CCAGGAGGTC AGCGCGCTGC CGGAGACCCA GCAGCAGATC
CTGCGTCTCA ACCGGGATGT GGAGGTCAAC CAGGACATCT ACGTGCAGCT GCTCAATCGC
ATGCAGGAGA TGGATATTGC CCGCGCCAGT ACGGTGGGCA ACGTCCGTAT CCTGGACGAT
GCCCAGGCGG GGCTGTCCCC GGTCGAACCG CAGCGCAACA TGATCGTGAT GCTGTCCACG
GTATTTGGCG GTGGCCTGGC GATTGCGCTG GTGCTGGTGC GCGGGATGTT CAACCGCGGG
GTGGAATCAC AGGAGGAGAT CGAGGGGATC GACCTCCCGG TGTATGCCAG CGTGCCGCGT
TCCAGGGCGC AGGAGAATCT GCTGCGCCGG GTGAAACGGC GCCACCAGTC GCGGGGGCAT
GACGTTCCAG GGGATGTACT GGCCTCGATC GACCCGGCCG ACGACGCCAT CGAGGCCCTG
CGTGGCCTGC GCAGCAGCCT GCATTTCGCG ATGCTGGAGG CCGAGGACAA CCGGCTGGTG
ATTACCGGTC CGAGCCCGGA TGTGGGCAAG AGTTTTGTTT CGGTTAACCT GGCGACCGTT
TGTGCGCAGG CGGGACAGCG CGTGCTGATC ATTGACGCCG ACCTGCGCAA GGGGCATGTC
CACCACGCCT TCGGTCAGCG CAGCGACGGG GGACTCTCGG AGTTTCTGGC GGGCCAGGAA
TCCCTGGAAG GGGTGCTGCG CCGCACGGAT ATCCAGGGGC TGGACTACAT CGCCCGTGGC
AGCGCGCCGC CGAACCCGTC GGAGTTGCTG ATGAGCGACC GTTTCAGCCG CATGCTGGAG
CAGCTCAGCC GCGACTACGA TCTGGTGCTG ATCGACACGC CGCCGATCCT GGCGGTGACC
GATGCCGCCG TGGTCGCACG CCAGTGCTCG ACCACCTTGA TGGTGGTGCG CTTCCAGCTG
AACCCGCTGC GCGAGATCGA GTCGGCACGG CGCCGTCTCG ATGCGGCGGG AGTCGACGTG
CGTGGCTGTA TCCTGAACTC GATCGAGTAC AAGGCCTCGA CCAGCTACGG CTACGGTTAT
TATCACTACT CCTACAAGTA G
|
|---|
| Protein sequence | MTKNHSPGVP EGELDIGRLL GQLLDHKWLI IFITALFAIA GAVYATLSTP IYRADALVQV
EDMGRFSSPL SSVREMLGQE PRVEAELQIL RSRMVLGRTV DQEALDLVVR PHRMPVVGDY
LVRRGVERPA FAQSSVWAGE SINVGEFQVA RAYEGRTFTL EVLDDDRYRL INGDHELGEG
RIGEDVEFFE GDVRLRVAEM DAGPGARFDI QRRSRLAAIN SLRGQFEAGQ QGRESGVFSL
TLTDPDPQQA QRILNTISQI YLTQNVQRKA AEAEKSLEFL EEKVPDVRDQ LQTAEDALNE
YRTERDSVDL SQETRAVLDR LVNLERQLNE LEFEEAEISR RYTPSHPTYA ALIDKRQKLQ
EERNRLNQEV SALPETQQQI LRLNRDVEVN QDIYVQLLNR MQEMDIARAS TVGNVRILDD
AQAGLSPVEP QRNMIVMLST VFGGGLAIAL VLVRGMFNRG VESQEEIEGI DLPVYASVPR
SRAQENLLRR VKRRHQSRGH DVPGDVLASI DPADDAIEAL RGLRSSLHFA MLEAEDNRLV
ITGPSPDVGK SFVSVNLATV CAQAGQRVLI IDADLRKGHV HHAFGQRSDG GLSEFLAGQE
SLEGVLRRTD IQGLDYIARG SAPPNPSELL MSDRFSRMLE QLSRDYDLVL IDTPPILAVT
DAAVVARQCS TTLMVVRFQL NPLREIESAR RRLDAAGVDV RGCILNSIEY KASTSYGYGY
YHYSYK
|
|---|
| |