| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TK90_0285 |
|---|
| Symbol | |
|---|
| ID | 8806016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. K90mix |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013889 |
|---|
| Strand | - |
|---|
| Start bp | 297811 |
|---|
| End bp | 300180 |
|---|
| Gene Length | 2370 bp |
|---|
| Protein Length | 789 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | |
|---|
| Product | cytochrome c biogenesis protein transmembrane region |
|---|
| Protein accession | YP_003459536 |
|---|
| Protein GI | 289207470 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.352123 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCTCC TGAACCTGCG CAACTGGCTG GCGACCCTCC TGGTCGCATT CCTGCTGACC
CCGGGGCTGG CACATGCCAT CTTCGATGAT GATCTGCTGG ACCCGGATGA CGCCTTCAGC
CTGAGCGCCG AGGCCATTGA CGCGGACACC ATTCGCCTGA CCTGGGAGAT CGCGGACGGC
TACTACATGT ACCGCGAGCA GTTTGAGTTC GAACCCGAGA GCGAAGGGTT GGAGCTCGGC
GAACCGAACA TCCCCGATGG CGAGAAGAAG ACCGACGAGT TCTTCGGCGA GGTCGAGACC
TATCGCGACG AGGTCAGCAT CGAGCTTCCG ATCCTCGCGG CCGACAGCAC CGAGATCGAA
CTGACCGCGC GCTCTCAGGG TTGCGCCGAC CTCGGCGTGT GCTATCCGCC CCATTTCCAG
ACCGTCTCGC TGGAGCTTCC GGGCCTGCCG GGCGAGAACG GTGAAGAGGC GGCCGAAGAA
GAGGCCACAG AAGACGAAGC CGCCGACGAG GAACGCAGCG CCCTGGACGA GATGGGCGAC
CTCTCGGGCG ACGTGGGCGC CGCCGGCGAT CTGCTCGAGC CGGAAGAGGC CTTTGCCGCC
TCTCTCGAAG CGATCAGCCA AAACGCGGTC ATCCTGCGCT TCGAAATCGC CGAGGACTAC
TACCTCTACC GCGATCAGCT CGACGTGCGC ATCGCCGAAG GCGACGGGAT CGAGCTGGGA
CCGGTCAACC CGCCCGAGGG CGAACGTCAC GAGGACGAGT TCTTCGGCGA GACGGAGATC
TATCGCGATC AGGTCGAGAT CCTCGTCCCC GTGCTGCGCG ACGAGGACGA CGTCTCCGAG
ATCACCCTGG CGATTGACTA CCAGGGCTGC TGGGACGGCG GTGTGTGCTA CCCGCCGCTG
ACGCAGGAGG TCTCGGTCAG CTTCGACGCG GATCTGGCCA CCGAAGTCGA CGAGGACGCC
CTCCCGGAGA CCGGCGACGA GGCCCTGGAC GAGATCGACA CCGCCGAGGC CGCCCCGGAA
GAGGCGGACG ACGAGACCGC CGCACCCGTC ACCCAACAGG ACCGCATCGC GGCCCAGCTG
GCCGATGGCC AGATCTGGCT GGTGGCGCTG GCCTTCTTCG GCTTCGGTCT GCTGCTGACG
TTCACCCCCT GCGTGTTCCC GATGATCCCG ATCCTGTCGA ACATCATCAT CGGGCAGAAG
AACCTGACCA CACGCAAGGC ATTCCTGATC TCGCTGGTGT TCGTGCTGGC GATGGCGCTG
ACCTACACCA TCGCCGGGGT CTTCGCGGGA CTCGCTGGGG CCAACCTGCA GGCGGCCTTC
CAGAACCCCT GGATCATTGG GACCTTCGTC ACCATCTTTA TCGCGCTGGC GATGTCGATG
TTCGGCTTCT ACGAACTGCA GATGCCGGCC AGCGTGCAGA GCAAGCTGTC GCAGATCAGC
AACCGCCAGG AAGGCGGCAC CTACATGGGC GCCGGGATCA TGGGCTTCCT GTCGGCCCTG
ATCGTCGGTC CGTGCGTAAC CGCGCCGCTG ATTGGCGCCC TGCTCTACAT CAGCCACACC
GGCGATGCGG TACTGGGCGG CATCGCCCTG TTCTCCCTGA GCATGGGCAT GGGCGCCCCG
CTACTGGCGA TCGGCACCTC GGCCGGCCGC CTGCTGCCGA AGGCCGGTCC GTGGATGGAT
GCGATCAAGG CGGTGTTTGG CGTCGGCCTG CTGGCCATGG GCATCTGGCT GCTTGAACGG
GTGATCCCGG GCGAGGTCGC GATGTTCCTG TGGGCGACCC TGCTGATCGT GACTGCGATC
TACATGGGGG CCTTGCGCTC GCTGCCGGAG GGCACCTCGG GCTGGTACAG CCTGTGGAAG
GGCCTGGGCG TGGTGATCCT GATCTACGGC ATCCTGCTGA TGATTGGCGC GGCAACCGGC
GGCAAGGACG TGTTCCGGCC GCTGGCCAGC CTGAATCAGC CGGTGGCCTC GACCACCGGC
GAACAGGGCC CGACGGAGAT GGAGTTCACC AAGATCAACA GCCTGGAGGA CCTCGAGCGC
GAGGTCGAAC GCGCGCGCGA GAACGGACAG CCGGTGTTCG TGGACTTCTA CGCCGACTGG
TGCGTGGACT GCGTGCGCCT GGAACGCACC ACCTTCCAGG ACCCGCGCGT GATCCGGGCG
ATGGCCGATG TTCATCTGCT CAAGGCGGAC GTAACCGAGA ACACCTCGGA ACACCGCGAG
TTGATGCGCA ACTTCAGCCT GTTCGGCCCT CCCGCGATGA TCTTCTACGA CAGCGATGGC
AACGAGTTGC GCAACTACCG TAATGTTGGC TACCTGAATG CCGATCGCTT CCTGGCCCAT
GTGGAAAGCG CCATCGGGGT AACGCCATGA
|
|---|
| Protein sequence | MHLLNLRNWL ATLLVAFLLT PGLAHAIFDD DLLDPDDAFS LSAEAIDADT IRLTWEIADG
YYMYREQFEF EPESEGLELG EPNIPDGEKK TDEFFGEVET YRDEVSIELP ILAADSTEIE
LTARSQGCAD LGVCYPPHFQ TVSLELPGLP GENGEEAAEE EATEDEAADE ERSALDEMGD
LSGDVGAAGD LLEPEEAFAA SLEAISQNAV ILRFEIAEDY YLYRDQLDVR IAEGDGIELG
PVNPPEGERH EDEFFGETEI YRDQVEILVP VLRDEDDVSE ITLAIDYQGC WDGGVCYPPL
TQEVSVSFDA DLATEVDEDA LPETGDEALD EIDTAEAAPE EADDETAAPV TQQDRIAAQL
ADGQIWLVAL AFFGFGLLLT FTPCVFPMIP ILSNIIIGQK NLTTRKAFLI SLVFVLAMAL
TYTIAGVFAG LAGANLQAAF QNPWIIGTFV TIFIALAMSM FGFYELQMPA SVQSKLSQIS
NRQEGGTYMG AGIMGFLSAL IVGPCVTAPL IGALLYISHT GDAVLGGIAL FSLSMGMGAP
LLAIGTSAGR LLPKAGPWMD AIKAVFGVGL LAMGIWLLER VIPGEVAMFL WATLLIVTAI
YMGALRSLPE GTSGWYSLWK GLGVVILIYG ILLMIGAATG GKDVFRPLAS LNQPVASTTG
EQGPTEMEFT KINSLEDLER EVERARENGQ PVFVDFYADW CVDCVRLERT TFQDPRVIRA
MADVHLLKAD VTENTSEHRE LMRNFSLFGP PAMIFYDSDG NELRNYRNVG YLNADRFLAH
VESAIGVTP
|
|---|
| |