Gene Slin_6407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_6407 
Symbol 
ID8730191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp7763330 
End bp7764493 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content41% 
IMG OID 
ProductEndo-1,4-beta-xylanase 
Protein accessionYP_003391164 
Protein GI284041234 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.760258 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTACGGT TTTTTACCTT TTCGAAATGC CTTTTATCAA CCTTTAAATC TTTTTCAATT 
GTGCTTTCGC TTCTTATATA TAGCTTCCTA GCAGCCTGCT CTTCTCAATA TAATACAATT
TTGCCAAACC AGGAAAACAC GATTGAAGCA ACCTTTGCCA CTCGATTGGC CAGTATCGCC
ATAGATAGTA ATGCGACGTT AAAGTCGGTG TCATCTTTTC CAGTTGGTGC CGCACCAGGC
AGATGGTTAC AGACAAAATC GCCGAAAGGC TTTAAGTTAC TTAACGAGCA GTTTAACTCC
GAGACCGTTC ATGCTTACAT GAATATTCAA ACCAGCCCCG GTAATTATAA TTTTACAGAG
CCTGATTACT GGGTTGAGTA TGCTAAAACA CATAGTGTTC GCTTACATGG TCATTGCCTG
GTTTATCATC AGGCAGCACC TAATTGGCTA CTAACGTACA AAGGCACCAC CGCCGATTTT
GAAAAAAACA TCAAAACTCA TATTCAGACT GTAGTAGGCC GCTATAGGGG GAAAATTAAA
AGCTGGGACG TGATTAATGA GGTTTTTAGT TATTCAACTG GGGCCATAAT GTCAACACCA
TTCCGCAAAC TGTATGCGAG TGACGAGGCT TATCTGATGT TCGTAAAACG CTGTTTTCAG
TGGGCTCATG AAGCCGACCC GGATGCGCTT CTATTTTATA ATGACTCTAA CTATGAAATT
GGCGATGCTA AAGTAAATGC TGTTTTACAA CTAGTAGCCG ACTTTAAGCG CAGTGGCATC
CCCATTCATG GTTTAGGCAC GCAAACGCAC ATTAGCATTC GTACGGCAAC CAGCGGTATT
TATAGTTCCC TACAGAAGTT AGCTACGTCT GGCCTTCTCA TTCACGTCTC AGAGCTTGAT
ATTCGGCTGA ATCCGGACAA TTCATCCAAT TTCACCGTTA CCAACCAGTT ATTAGATGCA
CAACGTATTA TGGCTCAAAC TGTGGTTCAG TACTATAAAC GATTGATACC CGTTTCGCAA
CAATACGGCA TTACCATGTG GGATTTAGAT GATGGTAATA GCTGGATCAT TTACCAAGAG
AAACAAAAGG ATGCTCCTTG TCTATTTGAC GCAGATTATA ACAAAAAACC TGCTTTCTAC
GGATTCTTAG AAGAGCTAAA ATAA
 
Protein sequence
MLRFFTFSKC LLSTFKSFSI VLSLLIYSFL AACSSQYNTI LPNQENTIEA TFATRLASIA 
IDSNATLKSV SSFPVGAAPG RWLQTKSPKG FKLLNEQFNS ETVHAYMNIQ TSPGNYNFTE
PDYWVEYAKT HSVRLHGHCL VYHQAAPNWL LTYKGTTADF EKNIKTHIQT VVGRYRGKIK
SWDVINEVFS YSTGAIMSTP FRKLYASDEA YLMFVKRCFQ WAHEADPDAL LFYNDSNYEI
GDAKVNAVLQ LVADFKRSGI PIHGLGTQTH ISIRTATSGI YSSLQKLATS GLLIHVSELD
IRLNPDNSSN FTVTNQLLDA QRIMAQTVVQ YYKRLIPVSQ QYGITMWDLD DGNSWIIYQE
KQKDAPCLFD ADYNKKPAFY GFLEELK