Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_6217 |
Symbol | |
ID | 8730000 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | + |
Start bp | 7537621 |
End bp | 7540110 |
Gene Length | 2490 bp |
Protein Length | 829 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | |
Product | 40-residue YVTN family beta-propeller repeat protein |
Protein accession | YP_003390975 |
Protein GI | 284041045 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.597655 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCT ACTCAACTCT ACTCTGCGGC TTCAGTCTGC TGCTGGCCAT GATGGCGGGA TGCCACCGGG CGGGCAATAC AGCCGCGTCT TCGGAAGAGG CTGAAACGTA TCAGAAGCTG GCGGCTAAAC GGGTCAATCT CCCCAACGGC TGGGCGCTGA CGCCACCGGG CCGTAGCCTC GATCTGGACG ATCTGCCTCT GAATCTGGTG GTGTCGCCAT CGAAAAAATA CCTGGCCGTA ACTAACAACG GGCAGAGTAC CCAAAGCATC ACCCTGATCG ATGCCGGTTC GGAGCAGATT CTGGATACGG CTAAAGTTGG TAAGTCGTAT TTGGGACTGG CGTTTAGTCA GGACGAAACA CGGCTCTATG CGTCGGGTGG GAACGATAAT AAGGTTCTGG TCTATAAAAT AGAGAACAAA CAACTGGTAC CCGACGAGCC GATTGTGCTC GGAAAACCCT GGCCCGTTAA AATTTCGCCG ACGGGCTTGT GCGTCGATGA TGCGAAGAAT AGACTTTATA TCGTCACGAA AGAAGATAGC TCGCTCTATA TCGCCGATAC CAAGACCCGG CAGGTACTTA AAAAGCTGAA CATCGGAGCT GCAGCTTACA CCTGCCTGCT GTCGCCCGAC AAAAATGAGT TGTTTATTTC GTCCTGGGGT GGTGCCAGCG TGCTGGTCGT GGATGTCAAC AAACAGACGA TAGCCGCTAA AATTCCGACG AATAAGAATC CCAACGACCT GCTGCTTACC AAAGATGGGA AATACCTCTA CGTAGCCAAT GGCAACGACA ACACCGTGGC GCTCATCGAC GTCGCGAAGC GGCAGGTGAT TGAAACGCTC ACGACATCGC TCTTTCCCAA TGCACCCGTT GGCACCACGC CCAACGGACT AGCCCTGAGT GACGACGAAA ACACGCTCTA CATCGCCAAT GCTGACAACA ACTGTCTGGC GGTATTCGAC GTAACGAAGA AAGGACACAG TCTGTCCAGC GGTTTTATTC CGACGGGCTG GTACCCAACG GCCGTGAAGG TGATTGGCTC AAAGCTCTAC GTCACCAACG GCAAAGGATT TTCCTCGAAA GCCAACCCCA AAGGGCCTAA TCCAGTACGT ACGCGTACTC CACAGCAGGT TGGCCCCAAT CCGCAGGCCA ATCCCGGCCC GGTGCAGTAC ATTGCTGGTC TGTTCAAGGG TACGCTCTCC ATCATCGACA CGCCGGATAC GGAAACGCTG GCGGCTTATT CGCGGCTGGT ATACGCCAAT ACGCCGTACA CCAAGAGTAA GGAACTGCGT ACGGAGGGCG AAGCTGGTAA CCCAATTCCG ATGCGGGTGG GAGATAAGTC GCCCATCAAA TACGTGTTTT ACATCATCAA GGAGAACCGC ACCTACGACC AGATTCTGGG CGACATGAAA GAAGGCAACG GCGATGCGTC TCTCTGCCTG TTCCCCGAAA AAGTAACGCC CAACCAGCAC GCGCTGGCAA AGGAGTTTGT ACTGCTGGAC AACTTCTACG TCGATGCCGA AGTCAGTGCC GATGGGCATA ACTGGTCGTC GGCGGCTTAC GCCAATGATT ATGTCGAGAA GAACTGGGTA ACCAGCTATG GCGGTCGGGG CGGTACGTAC GATTACGAAG GCCAGAAAGA AATAGCGCAT CCCCGCGATG GATTCATCTG GGACCATTGC CAGCGGGCGG GCATATCGTT CCGGAGTTAC GGCTGGTTTG CCGACGATGA AAAACCGAAC ATCAAAACGC TGGAAGGCAA ATTCTGCCCG ACCTTCAAAG GGTATAATCT GGGCTATATG GACAGCAAAC GCGAGGAAGC CTGGGAAGCC GATTTTGATG GATTGGTAAC CGCCGGAAAA CTGCCCACCT TCAATACACT CCGATTTGGC AACGACCATA CGTCGGGTGC CCGTATTGGC ATGCCCACGC CCGATGCCGC CGTTGCGGAT AACGATCTGG CCGTGGGTCG GTTCGTAGAG CACCTGTCCA AAAGTTCGAT CTGGAATCAG TCGGTGGTGT TTATTCTGGA AGATGATGCC CAGAACGGTC CCGATCACGT GGACGCGCAC CGCTCCATCG CGTTCGTAGC CGGGGGCTTT GTGAAGCGTG GTTTTGTGGA TCATACCATG TACTCGACCT CGGGGATGCT GCGTACCATC GAGCTGATTC TAGGGCTGAA ACCCATGAGC CAGTACGATG CGGCTGCTAC GCCCATGTGG CGATGTTTCG ATAAAAAAGC TAATCCGGCT CCGTTTACCG CCCGTGAAGC CGGTATCGAC ATCAACCAGA AAAACGTAGC CGTCAATGTA AACTCGAAAC GCTCCTCGCT CTTTAACCTA ACCCGTCCTG ACGAAATCGA CGACCTTATT TTCAGTGAGA TTGTGTGGCA AACGGTGCGT GGGGAGAAAA GCGTGATGCC TGCTCCGCGC CGGGGCGCCT TTGTCCGGAC GGGTAAAGAT GCCGATGGCG ATGAGGACGA TGATGACTAA
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Protein sequence | MKTYSTLLCG FSLLLAMMAG CHRAGNTAAS SEEAETYQKL AAKRVNLPNG WALTPPGRSL DLDDLPLNLV VSPSKKYLAV TNNGQSTQSI TLIDAGSEQI LDTAKVGKSY LGLAFSQDET RLYASGGNDN KVLVYKIENK QLVPDEPIVL GKPWPVKISP TGLCVDDAKN RLYIVTKEDS SLYIADTKTR QVLKKLNIGA AAYTCLLSPD KNELFISSWG GASVLVVDVN KQTIAAKIPT NKNPNDLLLT KDGKYLYVAN GNDNTVALID VAKRQVIETL TTSLFPNAPV GTTPNGLALS DDENTLYIAN ADNNCLAVFD VTKKGHSLSS GFIPTGWYPT AVKVIGSKLY VTNGKGFSSK ANPKGPNPVR TRTPQQVGPN PQANPGPVQY IAGLFKGTLS IIDTPDTETL AAYSRLVYAN TPYTKSKELR TEGEAGNPIP MRVGDKSPIK YVFYIIKENR TYDQILGDMK EGNGDASLCL FPEKVTPNQH ALAKEFVLLD NFYVDAEVSA DGHNWSSAAY ANDYVEKNWV TSYGGRGGTY DYEGQKEIAH PRDGFIWDHC QRAGISFRSY GWFADDEKPN IKTLEGKFCP TFKGYNLGYM DSKREEAWEA DFDGLVTAGK LPTFNTLRFG NDHTSGARIG MPTPDAAVAD NDLAVGRFVE HLSKSSIWNQ SVVFILEDDA QNGPDHVDAH RSIAFVAGGF VKRGFVDHTM YSTSGMLRTI ELILGLKPMS QYDAAATPMW RCFDKKANPA PFTAREAGID INQKNVAVNV NSKRSSLFNL TRPDEIDDLI FSEIVWQTVR GEKSVMPAPR RGAFVRTGKD ADGDEDDDD
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