Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_6103 |
Symbol | |
ID | 8729884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 7399808 |
End bp | 7401172 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | |
Product | protoporphyrinogen oxidase |
Protein accession | YP_003390864 |
Protein GI | 284040934 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.507474 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACAATTG GCATTATCGG TGCAGGCATA TCGGGGTTGA CACTGGCTTA CGAATTACAA CGGCGGGGTA TTGCGTATCA CCTCTGGGAA GCAGCCGGTC AGGCCGGGGG TTACATCCGG TCGCAGCGGG ACTGGCCCGA CGGCCCATCC GGGCGTAATT ACCTGCGTGA GCTTGGCCCA AACTCACTCC TTGGCGATGC CGAATTACTT AACTGGCTCG ACGAACTGGG CCTGACACCC GAGCTTACCT TTAGCCAGCC GGTTAGTAAG GCCCGGTTTA TTTTTCGCGA CGGCAAATAC CGGCAACTGC CATCAGGACC GCCTTCGCTG CTTTTTGGCA ATTTTTTTAG CTGGAAGACC AAGCTCGCTA TTCTCCGCGA ACGGAACAAC AAGACGGTAT CGCCCCCCGG CGAAACGCTG GGCCAGTTTT TCAGACGCCG TTTTTCCAGC GAAATAGTCG ATTACGCCCT CGGCCCGTTT GTGGCGGGCA TCTACGCCGG TGACCCCGAA CAACTGCTGG TCTCCGAAAC GTTTCCCAGC CTGCTCCAGT ACGAAAAGGA ATATGGTTCG GTGCTGCGTG GCCTGATCAA AAGCCAGTCG GCTGGCGGGT CAGCTATTGG TCGTCGGCAA TCATTTAGCT TCCGCGAAGG GATGCAGATG CTGCCCAACG CGCTGGCCGC AAAACTGACT AATCTCTCGC TCAACGAGGC CGTCAGCAGT ATCAGTCCCA CACCAAACGG CTGGGAGGTT GAAACAAATA CCGGCACCAC CACCGTCGAT AAACTAGTGC TCGCGGTCGG CACCGATGCG GCTGCCCGGC TGGTAGACCA ACGCTACCCC GATCTGGCTC GTACGCTTCA GGCCATCACG TACCCACCCA TGACGGCCGT ACATTCGGCC TACAAACGTG CCGATGTGCG TCATCCGCTC AATGGATTTG GGGGGTTGAA CCCGGCCGTT GAAGGACGTT TTGCCGCCGG ACACATCTGG AGCAGTTCGA TTTTCACGGG CCGCTGCCCG GACGATGAAG TTCTTTTCAC CACCTTCGTA GGTGGGCAGA CCGGCGCGCA CAATACCCGG CACCCGGACA GTGTACTGGC CCATAACGTC CATAAAGAAC TGGTCGATGG GTTTGGCATT ACAGCGGCTA CACCCGTTTA TCAGTCTGTT TTTCGGTGGG AGCGAGCCAT TCCGCAGTAC GATGCCACAC TGGCCTCGGC AAAAGAATCG GTAAAGGCTA TGGAGGCAGA TCAACTGTTT GTTTGCGCCA ACTGGTACGG GGGTGTTTCC CTGTCCGACT GCATCGGGAA ATCCCGAAAA TTGGCTGACC AACTGGCGGT TAAGCCGTTT ATTAAGAATT TTTAA
|
Protein sequence | MTIGIIGAGI SGLTLAYELQ RRGIAYHLWE AAGQAGGYIR SQRDWPDGPS GRNYLRELGP NSLLGDAELL NWLDELGLTP ELTFSQPVSK ARFIFRDGKY RQLPSGPPSL LFGNFFSWKT KLAILRERNN KTVSPPGETL GQFFRRRFSS EIVDYALGPF VAGIYAGDPE QLLVSETFPS LLQYEKEYGS VLRGLIKSQS AGGSAIGRRQ SFSFREGMQM LPNALAAKLT NLSLNEAVSS ISPTPNGWEV ETNTGTTTVD KLVLAVGTDA AARLVDQRYP DLARTLQAIT YPPMTAVHSA YKRADVRHPL NGFGGLNPAV EGRFAAGHIW SSSIFTGRCP DDEVLFTTFV GGQTGAHNTR HPDSVLAHNV HKELVDGFGI TAATPVYQSV FRWERAIPQY DATLASAKES VKAMEADQLF VCANWYGGVS LSDCIGKSRK LADQLAVKPF IKNF
|
| |