| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5663 |
|---|
| Symbol | |
|---|
| ID | 8729437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 6898077 |
|---|
| End bp | 6899864 |
|---|
| Gene Length | 1788 bp |
|---|
| Protein Length | 595 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | RNA binding S1 domain protein |
|---|
| Protein accession | YP_003390427 |
|---|
| Protein GI | 284040497 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.726551 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA CGCAGCAACG CGAACTGCCG GCATTTGATT GGGACCGGGC AGACAACAAA
GGGTTTGGAA GCGGCTATTC GGTTGAAGAA CACAACCGGA TGTTAGAACT TTACGACAAC
ACACTGTCGG AAGTTAAAGA GAAAGAAGTG GTAATGGGAA CCGTCGTTGG GATAACGGAT
CGGGAAGTAC TACTCAACAT CGGCTTCAAG TCGGATGGCT TAGTGCCAGC TTCTGAATTC
CGGGATATGC CGGACCTGAA GATGGGTGAT GAAATTGAAG TTTACGTAGA AAATCAGGAA
GACCCGAACG GTCAGCTGGT GCTTTCTCGC AAAAAGGCGA AAGTGATCAC TGCCTGGCAG
AAAATCCAGC GTGCTCTGGA CGAAGACCTC GTTATCGATG GTTTCGTTAA GCGCCGGACA
AAGGGTGGCC TGATCGTTGA TATTTTCAGC ATTGAAGCGT TCTTGCCAGG TTCGCAGATC
GACGTGAAGC CAATTCGCGA TTTCGACATC TTCGTTGGTA AGAAAATGGA GGTTAAAGTC
GTTAAGATCA ACTATGCAAA TGACAACGTA GTCGTTTCGC ACAAAGTCCT GATCGAGAAA
GACCTCGAAG CACAACGTGC ACAAATCCTG AACAACCTCG AAAAAGGTCA GGTACTGGAA
GGCGTTATCA AGAACATGAC CAACTTTGGT GTGTTCATCG ATCTTGGTGG CGTAGATGGT
CTGTTGCACA TCACGGATAT TTCGTGGGGT CGTATCAGCC ACCCATCCGA AGTACTGCAC
CTCGACCAGA AAGTCAACGT GGTTGTACTC GACTTCGACG AAGACAAGAA GCGTATTTCG
CTGGGCATGA AGCAACTTCA GGCTCACCCA TGGGATGCTC TGGTTGAAGA CATTCAGGTT
GGTTCGAAAG TGAAAGGTAA AATCGTGAAC GTAGCTGATT ACGGCGCGTT CCTCGAAATT
CAGCCTGGTG TTGAAGGCCT GATCCACGTA TCAGAAATGT CGTGGTCGCA GCACCTGCGC
AACCCACAGG AATTCCTGAA AGTTGGTGAC GAAGTAGAAG CACAAGTGCT GACGCTGGAC
CGTAACGACC GTAAAATGTC GTTGGGCATC AAACAACTGA CGGAAGATCC ATGGACTCGT
CCGGAACTGC GCACCAAATA CGCCGTTGGC ACCAAGCACA AAGGCATGGT ACGTAACCTG
ACAAACTTCG GCCTGTTCCT CGAACTGGAA GAAGGTATCG ATGGTCTGGT ACACGTGTCT
GACCTGTCGT GGACGAAGAA GGTGAAACAT CCTTCGGATT TCATTAAGGT TGGCGACGAA
CTCGAAGTGC TGGTACTTGA ACTGGATGTT GACAACCGTC GTCTGGCGCT GGGTCACAAG
CAACTCGAAG AAAATCCTTG GGATACGTTC GAAACCGTAT TCGCCGTTGG TACCGTACAC
CGTTGCACAA TTCTGAACAA GAACGACAAG ATGGCTACCC TCGAACTGCC GTATGGTATC
GAAGGTTTCT CGTCACTCAA GAATCTGGGC AAAGAAGATG GTACCTTCGC TGAAGTTGGC
GAAACGCTTG ACTTCAAAGT AACGGAATTC TCGAAAGAAG AGAAGCGTAT CATGCTCTCG
CACACGAAGA CGTGGCAGGA GAAGAACGAG CCAGTAAAAG AGCAGAAAGC ACCTAAGGCC
GCTCCGGCAA AATCGTCGTC CGCACCAGCT CAGGCTGAGC GTGGCGCTAC GCTGGGTGAT
CTTGATGCAC TGGCTGCATT GAAAGAGCAA CTGGAAGGCC GCAACTAG
|
|---|
| Protein sequence | MSKTQQRELP AFDWDRADNK GFGSGYSVEE HNRMLELYDN TLSEVKEKEV VMGTVVGITD
REVLLNIGFK SDGLVPASEF RDMPDLKMGD EIEVYVENQE DPNGQLVLSR KKAKVITAWQ
KIQRALDEDL VIDGFVKRRT KGGLIVDIFS IEAFLPGSQI DVKPIRDFDI FVGKKMEVKV
VKINYANDNV VVSHKVLIEK DLEAQRAQIL NNLEKGQVLE GVIKNMTNFG VFIDLGGVDG
LLHITDISWG RISHPSEVLH LDQKVNVVVL DFDEDKKRIS LGMKQLQAHP WDALVEDIQV
GSKVKGKIVN VADYGAFLEI QPGVEGLIHV SEMSWSQHLR NPQEFLKVGD EVEAQVLTLD
RNDRKMSLGI KQLTEDPWTR PELRTKYAVG TKHKGMVRNL TNFGLFLELE EGIDGLVHVS
DLSWTKKVKH PSDFIKVGDE LEVLVLELDV DNRRLALGHK QLEENPWDTF ETVFAVGTVH
RCTILNKNDK MATLELPYGI EGFSSLKNLG KEDGTFAEVG ETLDFKVTEF SKEEKRIMLS
HTKTWQEKNE PVKEQKAPKA APAKSSSAPA QAERGATLGD LDALAALKEQ LEGRN
|
|---|
| |