| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_5169 |
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| Symbol | |
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| ID | 8728935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Spirosoma linguale DSM 74 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013730 |
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| Strand | + |
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| Start bp | 6311440 |
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| End bp | 6314529 |
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| Gene Length | 3090 bp |
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| Protein Length | 1029 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_003389940 |
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| Protein GI | 284040010 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.325981 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAACA GAACCGGAAT TATCATTCTG ACAGGCGTTA TTGCAGCCAT CTGCATTTAC
TTCCTGTCGT TCACGTTTGT CTCGCGGGGC GTTAAAGCCG ATGCCGAGGC CTATGCCACC
AACAAACAGG GTGTTGTTGA CCGCGAAAAG AAACAACACT ATCTCGATTC ACTTTGGAAG
GAGCCTATTT ATCTGGGCAG CACGCTTCAG GAAGTTACCG AGCGTGAACT GGGCCTTGGC
CTCGACCTGC AAGGTGGTAT GCACGTTGTA CTGGAAGTAT CGCCTGCCGA TATTCTTCGC
AGCCTGTCGG GCAACAACCG CGACCCCAAA TTCAACGAAG CCCTGAAACT GGCCGTTGAA
GATCAGAAAA CAAGCAACAC CAGCTTTGTT GATCTCTTTG CCAGTGAGTT CAAGAAACTG
GCTCCCGACA CCAAACTTGC TTCTGTGTTT GCTACCAGCG CCAACCGCAG CAAGATCAAC
TTCCAATCGT CGGATACCGA AGTACGGAAG TTGCTGAACG ATGAAGTAAA CGGCGCTACG
ACGCGGGCCT TCCAAATCAT CCAGGCGCGG GTCGACAAAT TCGGAGTAGC CAACCCAAAC
ATCCAGCGGT TGCCGGGTTC GGGTCGTATC CAGATCGAAT TGCCGGGCGT TGATAACCCC
GAGCGTATTC GTCGTCTGTT GACCGGTGCT GCCAAACTTG AATTTACCGA AGTATACCGC
CTGAACGAAC TGGCTCCGGC AATTGAAGGC ATGGGTGCGT ATCTGCTCAG CCAGGAAGCC
GCCCGCAAGG CCGCTCTGAA AACAACCGCC ACGACACCAG CAACGGGTTC GGCAGCACAG
GGTGCATCGA GCCTTGAGTC GCAGCTGGCG CAGGGAAGCA AGAAAGATTC GACAGCAAAG
AACGATACCG CAGCGGCTTC TGCTCAGGGC ACCGCGCTGA CACAGTTATT TTTGCCCGTT
GGCCAGGACC AACTGGGTGT TTACCTGAAA GATACCGCCC GGGCCAACGA CGTGCTGAAC
GCACCTGAAG TAAAAGGTCT TTTCCCTGCC GATGCTTTTT TTGCCTGGGA TCGTAAAACA
TTCAAAGCCA CGGATGGCAA AGAAATTCTG CCCCTTTATT TCCTGAAAAA AGCCGGTGGA
CGTGCGCCCC TCGAAGGTGA TGTAATTACG GAAGCGTCGA ATGATTACGA CGACCGTGGC
CGTCCGGAGG TGACCATGAA CATGAACCCC GAAGGTGCCC GTAAATGGAA AAACCTGACA
GCCGCCAACG TAGGTCGGCC AGTAGCTATT CTGCTGGACA ATCTGGTATA CACAGCGCCA
AACGTACAGA ATGAAATTCC AAACGGTCGT TCGAGCATCT CGGGTAACTT CACCGTCGAA
GAAACCAAAG ACATGGCCAA CGTACTGAAA GCCGGTAAGC TCCCTGCGCC AACTAACATT
GTTGAAGAGA GCGTTGTAGG GGCTACCCTG GGTTCGGAAG CCGTAAGTGC CGGTGTTCTT
TCGTCGATCA TTGGTATTCT GCTGGTACTG GCCTTTGTGG TATTCTATTA CAACCGTGCC
GGTTTCATCG CCGACATCGC TCTGATCGTT AACCTATTCT TCCTGATGGG TGTAATGGCC
TCGCTGGGAG CCGTCCTGAC CATGCCGGGT ATTGCCGGTA TCGTACTGTC GATCGGTATG
GCCGTTGATG CGAACGTACT GATTTTCGAA CGGATTAAAG AAGAGATGGC GCTGGGTAAG
ACGTTCAAGC AGTCGGTTAC CGATGGTTTC CAGAACGCGC TTTCGTCGAT TATCGACTCT
AACGTAACGA CCTTCCTGAC GGGTATCGTT CTGTTCATCT TCGGAACGGG TCTGATTCTG
GGCTTTGCTA CCACACTGAT CATTGGTATT CTAACGTCTT TGTTCGCGGC TATTTTCATC
ACCCGCCTGT TGCTGGAATA CTATATCCGT AATGGCAAAA CGCTGTCATT TAGCTCAACC
TGGGCGAAGA ATCTGTTTGC CGATTCCAAC TTCGATTTCG TATCACGCCG GAAACTGTAT
TACACCGTCT CTTCGATCAT TATCGCAGCG GGTATTATCT CCGCCGTTTT CAAAGGATTC
GGTCTTGGTG TTGACTTCAA AGGTGGCCGG TCGTATGTGA TTCGTTTCGA GAAGGCTGTT
AGTACAGAAG ATGTGCGTAA CTCGCTGGAA ACTGTTCTAG GTGGCTCGCC TGAGGTGAAA
ACTTACGGTG GTACGGGTAT CGGTGCCAAT CAGGTGAAAG TAACGACGCC TTATCTGGTA
GATGATAACT CGCAGGGTGC CGATAAGAAA GCTGAAGCGA CCATTTACCA AGGGCTCAGC
GCTATTAAAG GCAATCCGGC CAAGATTGAA AGTTCGCAGA AAGTTGGTCC GACCATCGCG
TACGACTTGC TAACATCGGC CCTTTGGTCG ATCCTGCTGG CCGTAGCGGT AGTATTCGTG
TACATTCTGA TCCGCTTCAA GAAGCTGGCT TTTGGTTATG GAGCCGTTGT GGCCATGTTC
CACGACGTGC TGATCATTCT GGCTATCTTC TCCATCTTCA ATGGCCTACT GCCTTTCTCG
CTGGACGTTG ACCAGGCGTT TGTGGGTGCC TTGCTCACCA TTATGGGTTA CTCCATGAAC
GATACCGTTG TGGTTTTTGA CCGGGTACGG GAGTATCTGG CCGAAAACAA AGGCAAGAAA
GAGTCTATTG CTACCATTAT TAACAATGCC CTCAATAGCA CCCTGAGCCG CACGGCGGTA
ACCGGTTTCT CAACCATTCT GGTACTGCTG GTACTGTTCA TCTTCGGTGG TGAAACCATC
CGTGGTTTCT CGTTTGCCAT GCTCATCGGG GTTGTGGTAG GTACGTATTC GTCCTTGTTC
GTAGCTACCC CGATTGTAGT TGACTCGCTG ACCACGGCTC AGGAGAAAGA AGCGCTCACG
CCCACTATAG CCGCTGCCGC TGAAAAGAAA ACCGGCTTCG ATGCCATTCC GGCTGATTTC
ACGAGTGCTG CTCCGGCAAC ACCCGAAGAG TTCACGGCGA AAAAGGAGAA GAAGGATAAA
AAACCGTTGA TCCGCCCTTC GCAATCGTAA
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| Protein sequence | MQNRTGIIIL TGVIAAICIY FLSFTFVSRG VKADAEAYAT NKQGVVDREK KQHYLDSLWK
EPIYLGSTLQ EVTERELGLG LDLQGGMHVV LEVSPADILR SLSGNNRDPK FNEALKLAVE
DQKTSNTSFV DLFASEFKKL APDTKLASVF ATSANRSKIN FQSSDTEVRK LLNDEVNGAT
TRAFQIIQAR VDKFGVANPN IQRLPGSGRI QIELPGVDNP ERIRRLLTGA AKLEFTEVYR
LNELAPAIEG MGAYLLSQEA ARKAALKTTA TTPATGSAAQ GASSLESQLA QGSKKDSTAK
NDTAAASAQG TALTQLFLPV GQDQLGVYLK DTARANDVLN APEVKGLFPA DAFFAWDRKT
FKATDGKEIL PLYFLKKAGG RAPLEGDVIT EASNDYDDRG RPEVTMNMNP EGARKWKNLT
AANVGRPVAI LLDNLVYTAP NVQNEIPNGR SSISGNFTVE ETKDMANVLK AGKLPAPTNI
VEESVVGATL GSEAVSAGVL SSIIGILLVL AFVVFYYNRA GFIADIALIV NLFFLMGVMA
SLGAVLTMPG IAGIVLSIGM AVDANVLIFE RIKEEMALGK TFKQSVTDGF QNALSSIIDS
NVTTFLTGIV LFIFGTGLIL GFATTLIIGI LTSLFAAIFI TRLLLEYYIR NGKTLSFSST
WAKNLFADSN FDFVSRRKLY YTVSSIIIAA GIISAVFKGF GLGVDFKGGR SYVIRFEKAV
STEDVRNSLE TVLGGSPEVK TYGGTGIGAN QVKVTTPYLV DDNSQGADKK AEATIYQGLS
AIKGNPAKIE SSQKVGPTIA YDLLTSALWS ILLAVAVVFV YILIRFKKLA FGYGAVVAMF
HDVLIILAIF SIFNGLLPFS LDVDQAFVGA LLTIMGYSMN DTVVVFDRVR EYLAENKGKK
ESIATIINNA LNSTLSRTAV TGFSTILVLL VLFIFGGETI RGFSFAMLIG VVVGTYSSLF
VATPIVVDSL TTAQEKEALT PTIAAAAEKK TGFDAIPADF TSAAPATPEE FTAKKEKKDK
KPLIRPSQS
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