Gene Slin_5027 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_5027 
Symbol 
ID8728792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp6128304 
End bp6131102 
Gene Length2799 bp 
Protein Length932 aa 
Translation table11 
GC content53% 
IMG OID 
Product2-oxoglutarate dehydrogenase, E1 subunit 
Protein accessionYP_003389803 
Protein GI284039873 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.139273 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCAGT ACTCATATAT AGCCAACTCC GACGCGGCTT ACGTAGATCA ACTTTATCAG 
TCTTATAAAC AAGACCCACA GACAGTTGAC GAAAGCTGGC AGCAATTTTT TAAAGGGTTC
GAGTTTTCAC TCACCTACGG TGAAAAAGCC AATGGAAACG GTGCCGGCAC TCAGGCCGAG
CCAGGCAAAA GCAATGGTAC AGCCCTAAAC GGCTCATCCG GCAACGGACA GGCCACGGCC
AAACCAGTGG ATGCCACCCA CGCCGAAAAG GAAGTCTCGG TTGCCAGTTT GATCAAGGCA
TACCGGTCTC GTGGTCACTT GCTGGCGAAA ACCAATCCAC TCCGCGAACG CAAAGACCGG
CAACCCCGCG TCGATTTGCC CGATTACGCC CTTTCCGAAG CCGATCTGGA TACGGTATTC
GAGTCAGGTA AACTGCTCGG AATCGGACCG GCTACGCTGC GCGTTATTAT GGATTCGCTG
CGGAAAATCT ACGCTGGTGA AATTGGATTT GAGTACATGT ACATCCGCGA GCTGGATGTA
AAAAACTGGT TGCGCAATAA GATTGAGAAA GAAGCGCTCG TTTTCATGCC TACCCTCGAT
GAGAAAAAGC GTATTCTCGA AAAACTGAAC GAAGCTACCG TTTTCGAAAA CTTCCTCGCC
ACAAAATACC TCGGTCAGAA GCGTTTTTCG CTGGAAGGTG GTGAAGTGAC CATTCCGGCC
CTCGACACCA TCATCAGCCA GGCGGCCGAC ATGGGCGTTG AAGAGGTAAT GATCGGTATG
GCACACCGCG GACGGCTTAA CGTACTGGCC AATATTCTGG GCAAGTCGTA CGAGTCGATC
TTCGATGGCT TCGAAGGCAA CGTACCCGAT CAGGTACACG GCGATGGTGA CGTAAAATAC
CACCTCGGCT ATTCGAGTCT AACCGAAACC AAATCGGGCA AGCAGATCAG CGTGAAGCTG
GCCCCTAACC CATCGCACCT GGAAGCGGTT AACCCCGTTG TTGAAGGCTT TGTGCGGGCG
CAGGCCGACG AAGAATACCA GGGCGATTTC ACCAAGATCA TGCCTATCCT GATCCACGGC
GATGCAGCCG TTGCCGGTCA GGGTATTGTA TATGAGGTAA CCCAAATGGC GAAACTGGCG
GGCTATACGA CCGGCGGTAC AGTCCACTTT GTTATCAACA ACCAGATTGG CTTCACCACC
GATTTCGAAG ATGCCCGTTC ATCTATTTAT TGCTCAGACA TCGCCAAAAT CATCGACGCA
CCTATTTTCC ACGTCAACGG CGATGACCCT GAAGCGGTTA TTTTCTGCGC TAAACTAGCG
GTAGAGTTCC GGGAGAAGTT CAACCGGGAC GTGTTTATCG ACATGGTTTG CTATCGTCGC
TACGGCCACA ACGAAGCCGA CGAGCCGAAG TTCACGCAGC CGACGATGTA CAACATCATC
GACAAGCATC AGAATCCGCG TGAAATCTAC AAAGACCTGC TCATCAAGCG GGGCGATGTC
GATGCGGAAC TGGCGCAACG CATGGATACG GAATTCAAGA AGCAGTTGCA GGACCGGCTC
GACCGCGTCA AGCAAAAAGC CGAAATTCCA TACAAACCAC TGCGACTCGA CCGTGACTGG
TCGGAACTTC GTTTCAGCGA ACCCTCCGAC TTCGACAACT CGCCCGAAAC GGGAGTACCG
GCCGAAACAC TGCAAACTAT TGGCAACGCG CTGGTGAAAT TACCGGAAGG GTTCAAGCCG
CTGAAGCAGA TCGACAAGCT TCTGAAAGAC CGGCAAACGA TGCTCAACGA CACCAAAATG
GTGAACTGGG GTACGGCCGA ACTGCTGGCC TACGGCTCGC TGCTACTCGA AGGCAGAGCT
GTTCGGCTGA GCGGCCAGGA TGTGCAGCGG GGTACGTTCT CGCACCGCCA TGCCGTTCTG
CATGATTCCG AGACGAATGC CTCGTACTCG TCACTGGATT ACATTCAGGA TGGTCAGCAG
AAATTCCAGA TATACAACTC CTTGCTGTCG GAATACGGCG TCCTTGGCTT CGAATATGGT
TATGCCATGG CAAACCCGCA GGCGCTGGTG ATCTGGGAAG CACAGTTCGG CGATTTCTCG
AATGGTGCTC AGCTCATCAT CGACCAGTTT ATTGCCGCTG CCGAGTCGAA ATGGGGTATC
CAGAATGGTG TAACGATGTT GCTTCCCCAC GGCTACGAAG GCCAGGGGCC GGAGCACTCC
AACGCCCGCC CGGAACGGTA TCTGCAACTT TACGCAGAAT ACAACATGGT GGTGGCTAAT
ATTACTACTC CGGCAAACCT GTTCCACGTT ATGCGTCGGC AATTGGCCTG GGCATTCCGG
AAGCCGCTGG TTATCATGTC TCCCAAATCG TTGCTTCGCC ATCCGAAATG TATTTCCCCG
CTGGAGGACC TTACTAAAGG ATCGTTCCAG GAAATTATCG ATGATAGCTA CGCACAGGCG
AAAAAGGTGA CGCGCGTGCT GCTTTGCACA GGTAAAGTCT ATTACGACTT ACTCGACAAG
CAACAGGCCG ATCAGCGCGA CGACGTGGCC ATTGTACGCA TTGAACAGTT GGCTCCACTT
TCCAAAACGC AACTGAACGC CGTGTTGGAG AAGTACAAAA AAGCCGAAAT CTTCTGGGTA
CAGGAAGAGC CGGAAAACAT GGGCTACTGG ACGTACCTGC TACGGATTGG GTTGAACTAT
CCGATCATTT CGCGGAAAGC TTCGGCTTCA CCCGCTACCG GTTACCCAAA AATACATTCT
CAGGAACAAG CCGATATCGT TCGAAGAGCG TTTGAATAA
 
Protein sequence
MDQYSYIANS DAAYVDQLYQ SYKQDPQTVD ESWQQFFKGF EFSLTYGEKA NGNGAGTQAE 
PGKSNGTALN GSSGNGQATA KPVDATHAEK EVSVASLIKA YRSRGHLLAK TNPLRERKDR
QPRVDLPDYA LSEADLDTVF ESGKLLGIGP ATLRVIMDSL RKIYAGEIGF EYMYIRELDV
KNWLRNKIEK EALVFMPTLD EKKRILEKLN EATVFENFLA TKYLGQKRFS LEGGEVTIPA
LDTIISQAAD MGVEEVMIGM AHRGRLNVLA NILGKSYESI FDGFEGNVPD QVHGDGDVKY
HLGYSSLTET KSGKQISVKL APNPSHLEAV NPVVEGFVRA QADEEYQGDF TKIMPILIHG
DAAVAGQGIV YEVTQMAKLA GYTTGGTVHF VINNQIGFTT DFEDARSSIY CSDIAKIIDA
PIFHVNGDDP EAVIFCAKLA VEFREKFNRD VFIDMVCYRR YGHNEADEPK FTQPTMYNII
DKHQNPREIY KDLLIKRGDV DAELAQRMDT EFKKQLQDRL DRVKQKAEIP YKPLRLDRDW
SELRFSEPSD FDNSPETGVP AETLQTIGNA LVKLPEGFKP LKQIDKLLKD RQTMLNDTKM
VNWGTAELLA YGSLLLEGRA VRLSGQDVQR GTFSHRHAVL HDSETNASYS SLDYIQDGQQ
KFQIYNSLLS EYGVLGFEYG YAMANPQALV IWEAQFGDFS NGAQLIIDQF IAAAESKWGI
QNGVTMLLPH GYEGQGPEHS NARPERYLQL YAEYNMVVAN ITTPANLFHV MRRQLAWAFR
KPLVIMSPKS LLRHPKCISP LEDLTKGSFQ EIIDDSYAQA KKVTRVLLCT GKVYYDLLDK
QQADQRDDVA IVRIEQLAPL SKTQLNAVLE KYKKAEIFWV QEEPENMGYW TYLLRIGLNY
PIISRKASAS PATGYPKIHS QEQADIVRRA FE