| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4701 |
|---|
| Symbol | |
|---|
| ID | 8728465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 5722141 |
|---|
| End bp | 5724327 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 728 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | ABC transporter related protein |
|---|
| Protein accession | YP_003389478 |
|---|
| Protein GI | 284039548 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0115772 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.281049 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCAT TTCCTCTATA TAAACAACTG GACATCATGG ATTGCGGGCC AACGTGTCTG
CGCATGATCG CCCGTCATTA TGGCCGCTCC TACAGCGCTC AATTTGTTCG TGATAATACG
AACATCAGTC GGGAAGGGGT ATCCATGCTG AGCCTTAGCC GGGCGGCTGA ACGGTTAGGC
CTGCGTTCAG TGGGGTTCAA AACGGATTTT GATGGGTTGG TTTCTGAAAT CCAGCTACCC
TGTATCGTTC ACTGGAACCG ACGACACTTT GTCGTTGTCC ATAAAATTAA ACGCAATAAG
GTCTATGTGG CCGACCCCTG GAAAGGATTG ATGACTTATA CCGTCGACGA GTTTCTGGAG
GGCTGGCTAC CCGTTGGGTC CGACGATAAA AAAGGTGCTT TGCTGCTGCT GGAGCCTACA
CCCGCTTTTT ACGAATCGGA AGATGAAGTA CAATCCGGGT ATGGATTCGC GAGTCTGTTT
AAATTCCTGC TGGCTTATAA AGCGCTGGTT GCCCAGATTG GATTTGGCCT GCTGGCTGCC
GGTTTGTTAC AGCTTATTTT TCCGTTCCTA AATCAGGCCG TCATCGACGT GGGTATCAAT
GGGTTGAACA TGAGTTTCAT TTATCTGGTA CTCATCGCTC AAATTATGCT CTTTCTGGGC
AGAACATCCA TTGAGTTTAT CCGTAGCTGG CTACTGCTTC ATATCAGTAG CCGGATTAAC
CTATCCATTT TATCCAACTT TCTGGTAAAG CTGTTGCGGC TTCCGGTGTC ATTTTTCGAT
ACCAAAGTAT TTGGCGACAT CATTCAACGG ATCAACGACC ATCAACAGAT TGAACGCTTC
CTGACGGGCT CGTCCATTAC AACCGTTTTC TCTCTGGCCA ATCTGCTAAC GTTCGGGCTG
GTGCTGGCTT ATTACGACCA GTCTATTTTT GTCATCTTTC TACTTGGTAG TTCATTGTAT
GCGGGCTGGG TGCTGCTCTT TTTCAGCCGT CGTCGCAAGC TCAACTTCAA ACGGTTTGAG
GCCATGGCGA AGGAGGAAGG GGCGTTGATT GAATTGATTG GCGGTATGCA GGACATTAAG
CTGGCCAATG CCGAACTCCA GAAACGCCGA AAGTGGGAAA CCATTCAGGC CCGCCTGTTC
AAGCTGAATC TCCTGAGCCT GAGCCTTAAC CAATACCAGC AGGCGGGTGC GTCGTTCCTT
AACGAGGGTA AAAATATCCT GATTACGTTC ATTGCCGCCA GGGCCGTCGT TACCGGCGAC
CTGTCGCTGG GTGGGATGCT GGCCGTGCAG TATATTATTG GTCAGCTCAA CAGCCCTATC
GAGCAGATTA TCAGTTTTCT GCAAAGCTAT CAGGATGCTA AAATCAGCCT CGAACGGCTC
AACGAAATTC ATAATCTGGC GGATGAGGAA CCGCTCGACA AACCTATGGT CAGCAACCTC
CCCGACGATG GAAGCCTTAG CCTGGATAAT GTCACTTTTC ACTATCCGGG TGCCGTCGAT
CAGGCCATTC TGCAACGGAT CAGCTTACAC ATTCCGGTTG GTAAAACGAC GGCTATCGTG
GGGACCAGCG GCAGCGGTAA AACGACCCTG CTGAAACTTC TGCTAAAGTT TTATACCCCA
ACTGCGGGCG ACATCCGCCT TGGCGATATT AGTCTGAGCA ATGTGAGTTA TCAATTGTGG
CGGAGTAAAT GCGGAGTGGT GATGCAGGAT GGCTATATTT TTTCCGACAC AATTGCGCAG
AACATTGCTA TTGGTGCCGA AGAGGTCGAT ATGAAACGGC TGGTTCAGGC GGCCAAAACA
GCCAATATTC ATGAGTTTAT CCAATCACTT CTGCTCGGAT ACCAGACGCG CATCGGCTCG
GATGGCGTTG GACTGAGCCA GGGACAGAAG CAGCGGATAC TCATTGCGAG AGCCATCTAT
AAAAACCCTG ATTATATGTT TTTCGATGAA GCGACCAACG CGCTGGACTC CAAGAACGAA
AGTCAGATTA TGACCAATCT GAACGAGTTT TTTCAGGGGC GCACCGTCGT CGTAGTGGCG
CACCGGCTGA GTACGGTGAA GCACGCCCAT CAGATCATTG TTCTCGAAAA AGGGAAGATT
GTGGAGCAGG GCTCGCATTA TGAACTGGTT TACCAGGAGG GTAAGTACTT CGAACTAGTG
AAAAATCAGT TGGAATTAGG TCAATAG
|
|---|
| Protein sequence | MTAFPLYKQL DIMDCGPTCL RMIARHYGRS YSAQFVRDNT NISREGVSML SLSRAAERLG
LRSVGFKTDF DGLVSEIQLP CIVHWNRRHF VVVHKIKRNK VYVADPWKGL MTYTVDEFLE
GWLPVGSDDK KGALLLLEPT PAFYESEDEV QSGYGFASLF KFLLAYKALV AQIGFGLLAA
GLLQLIFPFL NQAVIDVGIN GLNMSFIYLV LIAQIMLFLG RTSIEFIRSW LLLHISSRIN
LSILSNFLVK LLRLPVSFFD TKVFGDIIQR INDHQQIERF LTGSSITTVF SLANLLTFGL
VLAYYDQSIF VIFLLGSSLY AGWVLLFFSR RRKLNFKRFE AMAKEEGALI ELIGGMQDIK
LANAELQKRR KWETIQARLF KLNLLSLSLN QYQQAGASFL NEGKNILITF IAARAVVTGD
LSLGGMLAVQ YIIGQLNSPI EQIISFLQSY QDAKISLERL NEIHNLADEE PLDKPMVSNL
PDDGSLSLDN VTFHYPGAVD QAILQRISLH IPVGKTTAIV GTSGSGKTTL LKLLLKFYTP
TAGDIRLGDI SLSNVSYQLW RSKCGVVMQD GYIFSDTIAQ NIAIGAEEVD MKRLVQAAKT
ANIHEFIQSL LLGYQTRIGS DGVGLSQGQK QRILIARAIY KNPDYMFFDE ATNALDSKNE
SQIMTNLNEF FQGRTVVVVA HRLSTVKHAH QIIVLEKGKI VEQGSHYELV YQEGKYFELV
KNQLELGQ
|
|---|
| |