| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4545 |
|---|
| Symbol | |
|---|
| ID | 8728309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 5510108 |
|---|
| End bp | 5511115 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_003389324 |
|---|
| Protein GI | 284039394 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0511236 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATA CACTACGTAA ACCTACCGTC AGCGGTGTAA ACGCAAAGTG CGAAAAAGCC
TGTTTGGTGA TTTTTTGCCT CCTGACGGCC AGCCTTGCGC TGTTTTCCTG CGGGGATAAA
AAGCAGAAAG CCGAGGCTCA GCAGGACTCG GTCCGAACGG CGCAAACGGC CCGGCAAATT
GCCGAAGTGC TGGGTGTGGC CGTAATCGAG CCAACTGCCC GCATCAGCAA ACTGGCCGCC
GAAACCGATG GGCTTGTTAA AACAGTGAAC GTCGACATTG GGCAGCAGGT CAAAAAAGGA
CAGGTGCTCC TGACGATGGA TAACGCCGTG GAATCGGCTC AGCTTCAGCA GGCGACCGTT
AAAATGAAGA CGCAGCAGGA CGCTATTGAA ACAGCCCGGC AAAATGTACA GACGCTTCGG
GTGCAGCTTC AGAAAGCCGA AGCCGACCTG AAACGGAACG AAACGTTATT TGCTGGTAAT
GCCCTCACCC GAAAAGAACT CGATGATTCA CGCTACGATG TACAAAACCT GCAACAGCAG
ATTCGGGCGT CGGAAGCGCA GGTGAAACAG GCACAGGGGC GCATTGCCGA GCTGCGGGCC
GATAGCGAGT ATGCCAGCAC AGTAGCTGGG CTGAAAACGG TAAAGGCACC CGCCGATGGT
ACCTTGTTGA GCCTGGATGC CAAAATAGGA CAGTACCTGA GCAGTAACCA GTCCATCGGC
GATTTCGCCC CCGCTGGCCC ATTGGTGGCG GTGACGGAAA TCGACGAACT GTTTGCGCTA
AAGGTAAAGG TCGGTCAAAA GGCATACATC CGCCAGCAGG GTAGCAGCGA CCGCCTGACG
ACCGGTACCG TCGTATTGGC ATCGCCCTAC TTACGTAAGA AATCGCTCTT TTCCGATAAC
GCGTCGAACC TCGAAGACCG GCGCGTTCGC GAAGTGCGCG TCCGGCTGGA CGATCCCGGT
AAGGTAATCA TTGGGGCGCG GGTCGAATGC CTCATTAACG TCAACTAA
|
|---|
| Protein sequence | MNDTLRKPTV SGVNAKCEKA CLVIFCLLTA SLALFSCGDK KQKAEAQQDS VRTAQTARQI
AEVLGVAVIE PTARISKLAA ETDGLVKTVN VDIGQQVKKG QVLLTMDNAV ESAQLQQATV
KMKTQQDAIE TARQNVQTLR VQLQKAEADL KRNETLFAGN ALTRKELDDS RYDVQNLQQQ
IRASEAQVKQ AQGRIAELRA DSEYASTVAG LKTVKAPADG TLLSLDAKIG QYLSSNQSIG
DFAPAGPLVA VTEIDELFAL KVKVGQKAYI RQQGSSDRLT TGTVVLASPY LRKKSLFSDN
ASNLEDRRVR EVRVRLDDPG KVIIGARVEC LINVN
|
|---|
| |