Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_4534 |
Symbol | |
ID | 8728298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 5498245 |
End bp | 5500584 |
Gene Length | 2340 bp |
Protein Length | 779 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | |
Product | TonB-dependent receptor |
Protein accession | YP_003389313 |
Protein GI | 284039383 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.732299 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACATCT ATAAACTGTT CATGGCCTCT CTCGTATGGG CTATGACGTC ACTCTGTGCG TTGGCGCAGC TTAGTACCTA CGGGCTTGTT TTCGATGCCC AAACCAAAGA ACCCTTACCC GGCGTAACGC TGGTTTTTAC TACCGGGAAA GGCGTGGTAA CCGATGCCTC CGGGCGATTC TCGCTGGTTA CGAACCTTAC CCGCGTTACG GTTTCGGCGG TTGGATACCG TCGGCAGGAG GTGGACCTTG TACCAGGCCA ACCCGTCCGC ATTGCCCTCG AACCCGCCGT CGAAGACCTG CAAACGGTGG TGGTAACTGG AAATCGGGAA GCCGCCCTGC GCACCGAAAC GCCCATCGCA ATCGCAAAAC TGTCGGCCCG ACTTATTAAT GAAACCAAGC CCACGAGCAT CTACGAAGTC ATTAATAAGA CGCCGGGCGT TCTGATGGTC AACCTGAATA ATGAGCAGCA CATGATGGCT ATTCGCCAGC CAATGACCAC CAATGCGTAC TTTCTATATC TTGAAGACGG CGTACCCGTT CGGCCAATGG GCGTGTTCAA TCACAACGCG TTGCTGGAGA TGAATCAGTT CACGGTGAGC TCCATCGAAG TCGTGAAAGG ACCGGTGTCG TCCATCTATG GCCCGGAAGC CGTGGGCGGG GCCGTAAATT TCATCACCCA GCGCCCAACG GCTGTGCCAA CGGTTCGCGC AGGCATTCAG GTCGACCAGT GGGGGTATCA GCGTGTACAG GTTGGCGCGG GAGCCCGGCA GGGTAAGTTC GGGATGTACG TGGGCGGACT GCTGTCGCGG CAGCGTGACT CTTGGCTGGC CAGCTCCAAC TACGACAAAT CGTCTTATTT TACCCGGCTC GAATACGCTT TTTCGCCGAA GACTCGCCTG ACGGGTACCG TTTCGTACAA CGATTACAAC TCGCAAACGA GTGGGAGTGT AGACAGTACA GCGTTTTTTG CCCGGCAGTA CGTGAGCACA ACGGATTTTA CCTACCGAAA AACGGTTTCG TTTCGTAGCC GACTCACGCT GGAGCATAGC TGGAAAAACG GCTCGGAGTC GTTCGTAACG GGCTTTGCCC GCAACAACAG CGTTGGGCAG AATCCGGCTT ATTCGATTCG CTGGATAACC GGTTCGCCAA CGGCAACGGG GCAGATCAAC AGCAATGACT TCCGCAGTTA CGGGGTCATT GCCCAGCATA CGCAGAAGCT GCCTTTCCTG AACAGCAAAC TCATTGTGGG TACCACGCTC GACCTGTCGC CCAATTCGTA TTACGCGTAC CAGACCGACC TGACCGCCGA ACTTCGGGCC GACAAAAAGT CGGTGATAAA GTATACCCAG GTTCGGGAGC GGCCCGATAA CCAACTGGCC AATTACTCGG CGCATATCCA TAACGTAGCG GCTTATGGGC AGTATGATCT TGAACCGGTA ACTAACCTGC GGCTTTCGGT TGGCCTGCGT TACGACCGGA TGGCCTTTGA TTACACCAAC GCGCTGGACG GAAGTTCGGG CGGTAAAGAC TACAGCCAGC TAACGCCCAA ACTGGGCATG ACCTACGATC TGGGCAAGAG TAAAGGGTTG TATGCCAATG TATCGAAAGG GTTTTCGCCC CCGGCACTTA CGTCAATTTT CCTTAAACGA ACGACGCCAG CCGCCACCGG CGAGCTATTC TACTACAACC TGCAGCCTGC CCGGTTTACG AACATGGAAA TAGGCGGCTG GGCTTCGCTG CTGAACCATA AACTCTATAT CGACGGGGCG TTTTACCAGA TGAACGGCAC CAACGAACTG CTGAACATTC GCCAGCCCGA TAACTCGACC GATTACCAGT CGGCGGGAAA AACGCTGCAC CGGGGCGTTG AACTGGGCAT TACCTACCGA CCATCGAAGC AGGTGTTTTT TCGGTTTGGG GGCACCCATG CCGTGCATCA GTTTGTGGAG TTTACGCTTA GCCAGCGCAT ATCCGATGCC GTACGGAACG TGAATGGCAG AGACATGCCT TCGGCCCCAC GCACGCTCTG GAATACAGAA ATCAGCTATT ATCCGGCCTG GCTGAAAAAT TTCCGGACGT CGGTAGAGTG GCAGCATGTG GCGGGCTGGT ATCAGAATCA AATCAACACC GTCCGGTATG GTGGCTATGA TTTTGCCAAT GTCCGGGCGG GTTACGAGTG GAAAGGCATT GAGGTATTTA CGAACGTGAT GAACGTAACC AATGCACTGT TCGCCACCAA TGCCACCCGG GGCAATAACG CCACCGACCG TACTACCTAC ACGCCAGCCG CCCCGCGCAC GGTGGTGATG GGTGTTCAGT ACACGTTTTC CGGTAAATGA
|
Protein sequence | MNIYKLFMAS LVWAMTSLCA LAQLSTYGLV FDAQTKEPLP GVTLVFTTGK GVVTDASGRF SLVTNLTRVT VSAVGYRRQE VDLVPGQPVR IALEPAVEDL QTVVVTGNRE AALRTETPIA IAKLSARLIN ETKPTSIYEV INKTPGVLMV NLNNEQHMMA IRQPMTTNAY FLYLEDGVPV RPMGVFNHNA LLEMNQFTVS SIEVVKGPVS SIYGPEAVGG AVNFITQRPT AVPTVRAGIQ VDQWGYQRVQ VGAGARQGKF GMYVGGLLSR QRDSWLASSN YDKSSYFTRL EYAFSPKTRL TGTVSYNDYN SQTSGSVDST AFFARQYVST TDFTYRKTVS FRSRLTLEHS WKNGSESFVT GFARNNSVGQ NPAYSIRWIT GSPTATGQIN SNDFRSYGVI AQHTQKLPFL NSKLIVGTTL DLSPNSYYAY QTDLTAELRA DKKSVIKYTQ VRERPDNQLA NYSAHIHNVA AYGQYDLEPV TNLRLSVGLR YDRMAFDYTN ALDGSSGGKD YSQLTPKLGM TYDLGKSKGL YANVSKGFSP PALTSIFLKR TTPAATGELF YYNLQPARFT NMEIGGWASL LNHKLYIDGA FYQMNGTNEL LNIRQPDNST DYQSAGKTLH RGVELGITYR PSKQVFFRFG GTHAVHQFVE FTLSQRISDA VRNVNGRDMP SAPRTLWNTE ISYYPAWLKN FRTSVEWQHV AGWYQNQINT VRYGGYDFAN VRAGYEWKGI EVFTNVMNVT NALFATNATR GNNATDRTTY TPAAPRTVVM GVQYTFSGK
|
| |