Gene Slin_4534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_4534 
Symbol 
ID8728298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp5498245 
End bp5500584 
Gene Length2340 bp 
Protein Length779 aa 
Translation table11 
GC content55% 
IMG OID 
ProductTonB-dependent receptor 
Protein accessionYP_003389313 
Protein GI284039383 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.732299 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACATCT ATAAACTGTT CATGGCCTCT CTCGTATGGG CTATGACGTC ACTCTGTGCG 
TTGGCGCAGC TTAGTACCTA CGGGCTTGTT TTCGATGCCC AAACCAAAGA ACCCTTACCC
GGCGTAACGC TGGTTTTTAC TACCGGGAAA GGCGTGGTAA CCGATGCCTC CGGGCGATTC
TCGCTGGTTA CGAACCTTAC CCGCGTTACG GTTTCGGCGG TTGGATACCG TCGGCAGGAG
GTGGACCTTG TACCAGGCCA ACCCGTCCGC ATTGCCCTCG AACCCGCCGT CGAAGACCTG
CAAACGGTGG TGGTAACTGG AAATCGGGAA GCCGCCCTGC GCACCGAAAC GCCCATCGCA
ATCGCAAAAC TGTCGGCCCG ACTTATTAAT GAAACCAAGC CCACGAGCAT CTACGAAGTC
ATTAATAAGA CGCCGGGCGT TCTGATGGTC AACCTGAATA ATGAGCAGCA CATGATGGCT
ATTCGCCAGC CAATGACCAC CAATGCGTAC TTTCTATATC TTGAAGACGG CGTACCCGTT
CGGCCAATGG GCGTGTTCAA TCACAACGCG TTGCTGGAGA TGAATCAGTT CACGGTGAGC
TCCATCGAAG TCGTGAAAGG ACCGGTGTCG TCCATCTATG GCCCGGAAGC CGTGGGCGGG
GCCGTAAATT TCATCACCCA GCGCCCAACG GCTGTGCCAA CGGTTCGCGC AGGCATTCAG
GTCGACCAGT GGGGGTATCA GCGTGTACAG GTTGGCGCGG GAGCCCGGCA GGGTAAGTTC
GGGATGTACG TGGGCGGACT GCTGTCGCGG CAGCGTGACT CTTGGCTGGC CAGCTCCAAC
TACGACAAAT CGTCTTATTT TACCCGGCTC GAATACGCTT TTTCGCCGAA GACTCGCCTG
ACGGGTACCG TTTCGTACAA CGATTACAAC TCGCAAACGA GTGGGAGTGT AGACAGTACA
GCGTTTTTTG CCCGGCAGTA CGTGAGCACA ACGGATTTTA CCTACCGAAA AACGGTTTCG
TTTCGTAGCC GACTCACGCT GGAGCATAGC TGGAAAAACG GCTCGGAGTC GTTCGTAACG
GGCTTTGCCC GCAACAACAG CGTTGGGCAG AATCCGGCTT ATTCGATTCG CTGGATAACC
GGTTCGCCAA CGGCAACGGG GCAGATCAAC AGCAATGACT TCCGCAGTTA CGGGGTCATT
GCCCAGCATA CGCAGAAGCT GCCTTTCCTG AACAGCAAAC TCATTGTGGG TACCACGCTC
GACCTGTCGC CCAATTCGTA TTACGCGTAC CAGACCGACC TGACCGCCGA ACTTCGGGCC
GACAAAAAGT CGGTGATAAA GTATACCCAG GTTCGGGAGC GGCCCGATAA CCAACTGGCC
AATTACTCGG CGCATATCCA TAACGTAGCG GCTTATGGGC AGTATGATCT TGAACCGGTA
ACTAACCTGC GGCTTTCGGT TGGCCTGCGT TACGACCGGA TGGCCTTTGA TTACACCAAC
GCGCTGGACG GAAGTTCGGG CGGTAAAGAC TACAGCCAGC TAACGCCCAA ACTGGGCATG
ACCTACGATC TGGGCAAGAG TAAAGGGTTG TATGCCAATG TATCGAAAGG GTTTTCGCCC
CCGGCACTTA CGTCAATTTT CCTTAAACGA ACGACGCCAG CCGCCACCGG CGAGCTATTC
TACTACAACC TGCAGCCTGC CCGGTTTACG AACATGGAAA TAGGCGGCTG GGCTTCGCTG
CTGAACCATA AACTCTATAT CGACGGGGCG TTTTACCAGA TGAACGGCAC CAACGAACTG
CTGAACATTC GCCAGCCCGA TAACTCGACC GATTACCAGT CGGCGGGAAA AACGCTGCAC
CGGGGCGTTG AACTGGGCAT TACCTACCGA CCATCGAAGC AGGTGTTTTT TCGGTTTGGG
GGCACCCATG CCGTGCATCA GTTTGTGGAG TTTACGCTTA GCCAGCGCAT ATCCGATGCC
GTACGGAACG TGAATGGCAG AGACATGCCT TCGGCCCCAC GCACGCTCTG GAATACAGAA
ATCAGCTATT ATCCGGCCTG GCTGAAAAAT TTCCGGACGT CGGTAGAGTG GCAGCATGTG
GCGGGCTGGT ATCAGAATCA AATCAACACC GTCCGGTATG GTGGCTATGA TTTTGCCAAT
GTCCGGGCGG GTTACGAGTG GAAAGGCATT GAGGTATTTA CGAACGTGAT GAACGTAACC
AATGCACTGT TCGCCACCAA TGCCACCCGG GGCAATAACG CCACCGACCG TACTACCTAC
ACGCCAGCCG CCCCGCGCAC GGTGGTGATG GGTGTTCAGT ACACGTTTTC CGGTAAATGA
 
Protein sequence
MNIYKLFMAS LVWAMTSLCA LAQLSTYGLV FDAQTKEPLP GVTLVFTTGK GVVTDASGRF 
SLVTNLTRVT VSAVGYRRQE VDLVPGQPVR IALEPAVEDL QTVVVTGNRE AALRTETPIA
IAKLSARLIN ETKPTSIYEV INKTPGVLMV NLNNEQHMMA IRQPMTTNAY FLYLEDGVPV
RPMGVFNHNA LLEMNQFTVS SIEVVKGPVS SIYGPEAVGG AVNFITQRPT AVPTVRAGIQ
VDQWGYQRVQ VGAGARQGKF GMYVGGLLSR QRDSWLASSN YDKSSYFTRL EYAFSPKTRL
TGTVSYNDYN SQTSGSVDST AFFARQYVST TDFTYRKTVS FRSRLTLEHS WKNGSESFVT
GFARNNSVGQ NPAYSIRWIT GSPTATGQIN SNDFRSYGVI AQHTQKLPFL NSKLIVGTTL
DLSPNSYYAY QTDLTAELRA DKKSVIKYTQ VRERPDNQLA NYSAHIHNVA AYGQYDLEPV
TNLRLSVGLR YDRMAFDYTN ALDGSSGGKD YSQLTPKLGM TYDLGKSKGL YANVSKGFSP
PALTSIFLKR TTPAATGELF YYNLQPARFT NMEIGGWASL LNHKLYIDGA FYQMNGTNEL
LNIRQPDNST DYQSAGKTLH RGVELGITYR PSKQVFFRFG GTHAVHQFVE FTLSQRISDA
VRNVNGRDMP SAPRTLWNTE ISYYPAWLKN FRTSVEWQHV AGWYQNQINT VRYGGYDFAN
VRAGYEWKGI EVFTNVMNVT NALFATNATR GNNATDRTTY TPAAPRTVVM GVQYTFSGK