| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4532 |
|---|
| Symbol | |
|---|
| ID | 8728296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 5494463 |
|---|
| End bp | 5496904 |
|---|
| Gene Length | 2442 bp |
|---|
| Protein Length | 813 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_003389311 |
|---|
| Protein GI | 284039381 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.885203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.799433 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCTGGG CAGCTAATAA AATTGTGAGT TTATCGGTTG TATTTTTCGG GAGCTTCCTC
TACTCAACGG CCACCCTTGC CCAGTATCAG CTTTCGGGTA CGGTACAATC CCGGCAGGAC
AGCTCGGCGG TGAAAAGCTG CATCATCTAC CTGAATAATG GCAATCGAAC GGCTCAAACG
GATAGCCTGG GGCAGTTTAC TTTTTCCAAT CTGCCAAACG GCACGTATGT GCTCAACACC
AGTAGCCCCG ATTTTAAAGC TGCCACACAG ACGGTAAAAC TCACCGAACG GAATCAATTT
GTGCGTATTT ACCTCGCTAG TCGGCTCGAA ACGCTGAACG AGGTAACCGT GACCGATAAG
CAGTCCGATT TCGGCTTCAC CCGGATGCGG GGGGTTGAGG GCATGGGCAT TTACGAAGGC
AAGAAATCCG AAGTGATTAT TCCGGAGCAG CTGGTGGCTA ATTTATCGAC CAACAACGCC
CGGCAGATCT ATGCGCGGGT GGCGGGGCTT AACATCTGGG AGAACGAGGG TGCCGGGCTG
CAACTCAGCA TTGGCGGGCG CGGCCTCGAC CCGAACCGTA GTTCGAACTT CAACGTACGG
CAGAATGGCT ACGACATTAG CGCCGACGCG CTAGGGTACC CGGAAAGTTA CTACACGCCC
CCCATCGAAG CCGTTGGCCG GATTCAGATT GTGCGGGGAG CCGCTTCGCT CCAGTACGGA
ACGCAATTTG GCGGGCTGCT TAACTTTGTC ATGCGAAAAC CCATTGCCGA CCGTAAGTTC
GAGTTGGTGG CCCGGCAAAC CGTGGGTTCC TTCGGGTTTT ACAACGCCTT TACCAGCGCC
AGCGGCACGG TAGGAAAGTT GAGCTATTAC ACGTTTTTCC AGTACAAGAA AGGCGATGGC
TGGCGACCAA ACTCCCATTT CACCAACTAC ACGGCCTTTG CCGACATCGA CTACCGGTTT
TCGGAGAATA CATCGGTGGG GTTCGACATT ACCCAGATGA GCTATCTGGC CCAGCAGCCG
GGCGGACTTA CCGACGCTAT GTTTCGGGAA GATCCCCGGC AAAGCAACCG CGAGCGTAAC
TGGTTTAAAG TAAACTGGAC GATGCCTGCC CTGCATTTCG ACCATAAGTT CAATGCCAAT
AATGAAGTAA ATGTGCGGGT GTTCGGGTTG TATGCCTATC GGTATTCGCT GGGGTTCCGG
CCAAACCGCG TGGCCAGCGT CGATGACAAC AGCGAACGGG ATTTGATAAA AGGTGATTTC
CAAAATTACG GTGCCGAAGC GCGGTACTTG AAACGGTACC AGCTCGCCAA ACAGCAGGCC
GTTCTGCTGG TGGGAACGCG CTATTACCAC GGCTATAACC ACAGCATACA AGGGCTGGGC
AGCACAGGTA AGGATGCCAA CTTTAGCTTT ACGGATACGG ACCAGGGCAT TGCTTCAGAC
TACCAGTTTC CTAACCGAAA CGTGTCGCTC TTTGCCGAAA ACATCCTGTA TGTAGGGGAG
AAATTATCCA TTACTCCCGG CGTGCGTTTC GAATACATTC ATACGACAGC CGATGGTTTT
TATGGCACCG TTACCCGCGA TCTGGCCGGT AACATCATCG ACGCCACCCG CACCAATGAA
ATCCGGACCA ACGGGCGTCA GTTTCTGCTG GGTGGTCTGG GCATTAGTTA TAAACCCACT
ACACAGCTCG ACATTTACGG CAATATTTCT CAGAATTACC GTTCCATCAC CTTCAGTGAT
ATGCGGATTG CCAACCCATC GTCGGTGATC GACCCCAATT TGCAGGACGA AAAAGGGTAT
TCCATCGACC TGGGTATTCG CAGTACGCAA ACCACGCTGT ATAACTTCGA TGTCAGCGCG
TTTTACCTGA ACTACAACAA CCGCATTGGC GAGGTGCAGT TCTACGACGC CAACGACCGC
GTTCTCCGCC GACGGGGCAA TATTGGTCAG GCCGTTATCA TGGGGCTGGA ATCCTATGCC
GAAGGCGACT TTCTCCGTCT CGCCAACCCA TCGAATACGA ACCTGAGTGG CGTCTTGTTT
GCCAATGTCG CCCTGATTCA CTCGACCTAC AAAGCCAGCG AAATTGCCGG AGTCGTTGGC
AATCAGGTTG AGTTTGTGCC GAATGTAAAC CTGAAAAGTG GCGTTCGTGT CGGCTACAAA
AACCTGAAAG CTTCGTTTCA ATACACCTAC CTATCGGACC AGTTTTCCGA CGCCACCAAC
TCCCGCGAAG GGGGCGTTTC GGCCGTAATC GGGCTGATTC CGGCCTACTC GATCATGGAC
GCCAGCCTGT CGTACCAGTT CAGCCGGTTT CGGCTGGAAG GCAGTCTGAA CAATCTAGCG
AATCGGGCGT ATTTTACCCG CCGGGCCACG GGCTACCCCG GACCCGGCAT CCTACCCTCC
GATGGACGCG GATTATACGT GACCTTACAG GTGAAAATTT AG
|
|---|
| Protein sequence | MFWAANKIVS LSVVFFGSFL YSTATLAQYQ LSGTVQSRQD SSAVKSCIIY LNNGNRTAQT
DSLGQFTFSN LPNGTYVLNT SSPDFKAATQ TVKLTERNQF VRIYLASRLE TLNEVTVTDK
QSDFGFTRMR GVEGMGIYEG KKSEVIIPEQ LVANLSTNNA RQIYARVAGL NIWENEGAGL
QLSIGGRGLD PNRSSNFNVR QNGYDISADA LGYPESYYTP PIEAVGRIQI VRGAASLQYG
TQFGGLLNFV MRKPIADRKF ELVARQTVGS FGFYNAFTSA SGTVGKLSYY TFFQYKKGDG
WRPNSHFTNY TAFADIDYRF SENTSVGFDI TQMSYLAQQP GGLTDAMFRE DPRQSNRERN
WFKVNWTMPA LHFDHKFNAN NEVNVRVFGL YAYRYSLGFR PNRVASVDDN SERDLIKGDF
QNYGAEARYL KRYQLAKQQA VLLVGTRYYH GYNHSIQGLG STGKDANFSF TDTDQGIASD
YQFPNRNVSL FAENILYVGE KLSITPGVRF EYIHTTADGF YGTVTRDLAG NIIDATRTNE
IRTNGRQFLL GGLGISYKPT TQLDIYGNIS QNYRSITFSD MRIANPSSVI DPNLQDEKGY
SIDLGIRSTQ TTLYNFDVSA FYLNYNNRIG EVQFYDANDR VLRRRGNIGQ AVIMGLESYA
EGDFLRLANP SNTNLSGVLF ANVALIHSTY KASEIAGVVG NQVEFVPNVN LKSGVRVGYK
NLKASFQYTY LSDQFSDATN SREGGVSAVI GLIPAYSIMD ASLSYQFSRF RLEGSLNNLA
NRAYFTRRAT GYPGPGILPS DGRGLYVTLQ VKI
|
|---|
| |