| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4400 |
|---|
| Symbol | |
|---|
| ID | 8728160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 5336232 |
|---|
| End bp | 5336978 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_003389180 |
|---|
| Protein GI | 284039250 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA AACCATTTCA GGTGGTTTAC GAAGACAATC ACCTGCTTAT CGTTAATAAG
GACCCCGGTA TTCTGGTACA GGGCGACCGC ACGGGCGATA TTACCCTGCT GGACGTACTT
AAGGACTATA TAAAAGAGAA GTACAACAAA CCCGGTGAAG TCTTTCTGGG CCTCGTTCAC
CGGCTCGACC GCCCCGTAAG CGGGCTGGTT GTGTTTGCGC GCACCTCGAA AGCGCTGGAA
CGCATGAACG AAATTTTCCG AAAACGCCAG GTCCAAAAAA CGTACTGGGC TGTAGTCCGG
CGTAAACCAC CGAAAGATTC GGATAAACTG GTTAACTGGC TTATCAAAGA TGAACAGAAA
AACCAGGTAA CGGTCTATGA TTACGAAGTG CCCAAGTCGC AGAAAGCCGA ACTTTCGTAC
CGGGTGCTTG GCAAAATCAA CGAACATTAC CTGCTCGAAG TGAACCCGAT TACGGGTCGT
CCCCACCAGA TTCGATCACA ACTGGCGCAT ATGGGTTGCC CGATTCGGGG CGATATTAAA
TATGGGTACG ACCGGGCTGT TGCAGACAAG AAAATTTACT TACACGCCCG TCGGCTGTAT
TTCATTCACC CGATCAAGCA GGCCGGAGCC GAAGATCGAC CTATTATTTG CAAAGCGGGT
TTACCGAATG ACCCGTTCTG GGAAGAGTTT CTCGAACTGG ATACCGAGAT ATACAATGAC
AAGAATTTGG ATATCACCTT CGAGTAA
|
|---|
| Protein sequence | MKKKPFQVVY EDNHLLIVNK DPGILVQGDR TGDITLLDVL KDYIKEKYNK PGEVFLGLVH
RLDRPVSGLV VFARTSKALE RMNEIFRKRQ VQKTYWAVVR RKPPKDSDKL VNWLIKDEQK
NQVTVYDYEV PKSQKAELSY RVLGKINEHY LLEVNPITGR PHQIRSQLAH MGCPIRGDIK
YGYDRAVADK KIYLHARRLY FIHPIKQAGA EDRPIICKAG LPNDPFWEEF LELDTEIYND
KNLDITFE
|
|---|
| |