Gene Slin_4030 details

Gene Information

• Locus tag: Slin_4030
• ID: 8727788
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 4839500
• End bp: 4843048
• Gene Length: 3549 bp
• Protein Length: 1182 aa
• Translation table: 11
• GC content: 55%
• Product: PKD domain containing protein
• Protein accession: YP_003388819
• Protein GI: 284038889

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 0.775047
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCTGGT TACCAACCTC CCTCCGGCAG TCAGTCCGTA TTTTTGGCTT TGCCGGACTT 
AGTCTGGCTT TGTATGCCTG CCTGAACAAT CAAAAAACGA TTTCCCAAAA CACTAAATCA 
CCGGTTTCAT CGGTGGCTCC TGCCAATGGA GCAGCCAGTA ATGAAGCCCA GCCCAAACCG 
GCTCCGGCCG GCCCGAAACG GGTGCTGGTC TTCTCGAAAA CGAAAGGCTG GAAACACACG 
TCCATTCCGT TCGGGATTGC AGCTCTCCAG AAGATGGGCC GGGAAAATGC GTTCCGGGTC 
GATACGACCA AGAATGCCGA CTATTTTAAC GACGACAGTC TGCGGCACTA CACCGCCGTT 
GTGTTTCTGA GTACAACCGG CAATGTGCTG AACCAGAAGC AGCAGGCCGC TTTTGAGCGG 
TATATTCAAG CCGGTGGCGG GTACATGGGC ATCCATGCCG CAGCCGACAC CGAATATGAC 
TGGCCGTGGT ATAACAAACT CGCAGGCGGC TACTTTGCCA GCCACCCCAG CAATTCCAAC 
GTCCGCAAAG CCACGGTGGA TGTAACAGAC AAAAATCACG CATCCACCGC CCATCTGCCC 
GATCATTGGG AGCGCACCGA CGAATGGTAC AATTACCGAT CGCTCTACGC TGACCTGACG 
GTGGTGGCCA ATCTGGACGA AAGCACCTAC GATGGCGGCA TCAACGGCAG CAACCACCCC 
ATTGCCTGGT ACCATGAGTT CGATGGTGGG CGCGCTTACT ATACCGGTGG TGGACACGAA 
GATTCGAGTT TCAGCGAACC GCTTTTTGTG CAGCACCTGC TGGGTGCCCT GAACTGGGTT 
ATGGGCAGCG GCAAACCGCT CGACTACAGC AAAGCTTATG CGACGGTTAC ACCCGAAGAA 
AACCGGTTTG TCAAAACGGT GCTGGTCAAT GACCTGAATG AGCCGATGGA GCTGGCCGTT 
GCGCCCGATG GCCGGGTGTT TTTCACCGAA CGAAGCGGTA ATCTGTCGGT CTACAATAAC 
CAGACCAACA AAAGCCAGCT GGTGCATCGC TTCGATGTTC CCACCAAAGC GGGGCATGGC 
GTGCAGGGAA TTACCCTCGA CCCAAACTTT GCGGCCAACC ACTTTCTGTA TGTCTATTAT 
TCCCCTCAAT TTACGCAGGA GCCATTCTAC AACCTGTCGC GCTTTGTAGT GAAGGATGAC 
AACACGCTTG ATCTGGCTTC CGAGAAAATC CTGCTGACGG TGCCGAGTAT CGACCAGCCG 
GGTTCGCACC ACGGCGGTTC GCTGGCGTTC GACAAAGAAG GCAACCTGTA CCTGTCGACC 
GGCGACCATA CTAACCCTTT CCCGTCCAAC GGCTACGCGC CCATCGACGC CCGCCCCGAC 
CACCTGGCCG CCGATGCACG GGGAACGGCT GCCAACACCA ACGATTTGCG GGGTAAGATC 
CTGCGGATTC GTCCGTTGCC CGACGGTACT TACACCATTC CCGAAGGAAA TCTATTCCCC 
AAAGGAATGG CCCAGACCAA GCCCGAAATT TACACCATGG GCCTGCGGAA TCCGTACCGT 
ATTGCCCTTA ACCCGAAATC GTCGGTCCTG TACTGGGGAG AAATTGGTCC CGATGCCGGA 
AAAGACAGCA GCACCCTCGG CCCGCGTGGG TATGACGAAT TTAACCAGGC GAAAAAGGCC 
GGTAACTTCG GCTGGCCGCT GTTCATTGGC AACAGTCAGC CGTATGGCGA TCTGGATTTT 
GCGACCAATG CCGTTGGCCC CCGTTTCGAC CCGAAAGCAC CGGTCAACAA CTCGTCTAAG 
AATACAGGAT TAAAAAACCT GCCGCCCACC AATCCGGCCA TGATCTGGTA TCCCTACGCG 
GCTTCGAAAG AGTTCCCGGA GCTGGGGCAG GGTGGCCGCA GCGCGATGGC GGGTGAGTTT 
TATACCTACG ACCAGAATTC TCCGTCGAAA AACAAATTCC CGGACTACTA CAATAGTGCC 
CTGTTCATTT TCGACTGGAT GCGCAACTGG GTCATGGCCG TTCGTGTCGA TAAAGATGAT 
AATTACATTC GTAGCGAGCC GTTTATGGCC GCTCAGGGCG ATTTCCGGCG ACCGATCGAC 
CTGGCCTTTA GCAAAGACGG TATTATGTAT ATGCTGGAGT ACGGCTCGGT CTATGGTGCT 
GATAACGACG ACGCCCGACT GGTAAAGATC GAGTATAATA CCGGCAACCG CCCGCCAATT 
GCCCGCGCCA GCGTGATTGA TTCTGTAGCT GCGGCCCAGC ATAATGCCCG CTCCTACCTC 
ACCTCCGACG GCCGTAATGC GCCCGTGCTT CGTGAAGCCA TTGGGCTGGC TCCGTTGCGG 
GTGAAGTTCG CCGGGCGCGG CACCGACCTC GACGACGATG ATGAAGTTAC CTATCAATGG 
CTGTTCGACG GCAAAACGGT GGCGTCTACC AAACCCATGG CAACTTACAC CTACACGCAG 
CCCGGCGTGT ACAACGCCAT TCTGAAAGTG ACCGATAAAA TGGGGCAGGT GGGCATGGAC 
ACTATTTCAG TAAAAGTGGG CAATGCCAAA CCAGAAGTAG CCATTGTCAC ACCAGATAAC 
AAGTCGTTCT TCTGGGAGAA TAAGCCCTTC ACCTATGCCG TGAAAGTGGC CGATCAGGAA 
GATAAAAAAA TCGACCCTAA ACGAATTAAG GTGCTTTACG AATACAGTGC TCAACCCAAT 
GGGGCACCCA TGACGGCTCC GCAGCAGGGA CACCAGGAAG TAGCCCAGCT GAGCGGGGGT 
TCGCTGGGCA AAACGCTCGT GGCGGGCAGC GACTGTAAAG CCTGCCACAC GATTGATAAA 
CCCTCTGTTG GCCCTACATT CCTGGCCGTT GCCGACCGAT ACAAAGGACA GGCAGGCAGC 
GTGGAACGGC TGGCCCGGAA AATTATTGAA GGCGGGGGCG GCAACTGGAG CAAAGACCAC 
CTGATGAGCG CTCACCCGCA AATTCCGGTA CAGGATGCAC AGGAAATGGT GAAGTACATC 
TTCTCGCTGA CCGATGCCCG GAAGCAAAAA GCCGTGCCCC TACAGGGTAC ACTCGCCCTG 
AACGAACACA AGCCGGAAGA CACCCGCGGG CAGTACACCC TGCTGGCCAC TTATACCGAC 
AAGGGTACGA AAAGCGTAGG GCCGCTTACC AGTTCAGAAG TGGTTACGCT GCGGAATGCC 
ACCGTCAAAA CCCTGAATGC CGATGCGTAC GTTGGTTTCC CCCGCTTTGG CAGCCGCCTG 
TCGGCCGGAA GCAACAAGGC GTATGTATTG CTGAAAGACA TTGACATGAC GACTATCAAG 
TCGCTGACGT ACGACTATTC ATCGCTCAAC AAAGACGGCG AAATTGAGGT CCGGCTCGAC 
TCCTACGCAG GGCCGGTTGT GAGCCGCGCT TCTTACAAAG CCACCGGCGA CTGGAAGACG 
ACCAATCAGG TAACGGGCAC GCTCAACAAA CCCTTCACCG GTCGGCACGA CGTATATGTG 
GTGGTAGTAA AGTGGAGCAA ACCCAACAAC GACATCATTC AACTGAACAG CATCCGGTTT 
AATCAGTAA 

 

Protein sequence

MTWLPTSLRQ SVRIFGFAGL SLALYACLNN QKTISQNTKS PVSSVAPANG AASNEAQPKP 
APAGPKRVLV FSKTKGWKHT SIPFGIAALQ KMGRENAFRV DTTKNADYFN DDSLRHYTAV 
VFLSTTGNVL NQKQQAAFER YIQAGGGYMG IHAAADTEYD WPWYNKLAGG YFASHPSNSN 
VRKATVDVTD KNHASTAHLP DHWERTDEWY NYRSLYADLT VVANLDESTY DGGINGSNHP 
IAWYHEFDGG RAYYTGGGHE DSSFSEPLFV QHLLGALNWV MGSGKPLDYS KAYATVTPEE 
NRFVKTVLVN DLNEPMELAV APDGRVFFTE RSGNLSVYNN QTNKSQLVHR FDVPTKAGHG 
VQGITLDPNF AANHFLYVYY SPQFTQEPFY NLSRFVVKDD NTLDLASEKI LLTVPSIDQP 
GSHHGGSLAF DKEGNLYLST GDHTNPFPSN GYAPIDARPD HLAADARGTA ANTNDLRGKI 
LRIRPLPDGT YTIPEGNLFP KGMAQTKPEI YTMGLRNPYR IALNPKSSVL YWGEIGPDAG 
KDSSTLGPRG YDEFNQAKKA GNFGWPLFIG NSQPYGDLDF ATNAVGPRFD PKAPVNNSSK 
NTGLKNLPPT NPAMIWYPYA ASKEFPELGQ GGRSAMAGEF YTYDQNSPSK NKFPDYYNSA 
LFIFDWMRNW VMAVRVDKDD NYIRSEPFMA AQGDFRRPID LAFSKDGIMY MLEYGSVYGA 
DNDDARLVKI EYNTGNRPPI ARASVIDSVA AAQHNARSYL TSDGRNAPVL REAIGLAPLR 
VKFAGRGTDL DDDDEVTYQW LFDGKTVAST KPMATYTYTQ PGVYNAILKV TDKMGQVGMD 
TISVKVGNAK PEVAIVTPDN KSFFWENKPF TYAVKVADQE DKKIDPKRIK VLYEYSAQPN 
GAPMTAPQQG HQEVAQLSGG SLGKTLVAGS DCKACHTIDK PSVGPTFLAV ADRYKGQAGS 
VERLARKIIE GGGGNWSKDH LMSAHPQIPV QDAQEMVKYI FSLTDARKQK AVPLQGTLAL 
NEHKPEDTRG QYTLLATYTD KGTKSVGPLT SSEVVTLRNA TVKTLNADAY VGFPRFGSRL 
SAGSNKAYVL LKDIDMTTIK SLTYDYSSLN KDGEIEVRLD SYAGPVVSRA SYKATGDWKT 
TNQVTGTLNK PFTGRHDVYV VVVKWSKPNN DIIQLNSIRF NQ