| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4011 |
|---|
| Symbol | |
|---|
| ID | 8727769 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 4821771 |
|---|
| End bp | 4822526 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | transposase IS4 family protein |
|---|
| Protein accession | YP_003388800 |
|---|
| Protein GI | 284038870 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000062749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0000247291 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTACCCCA CAGACCTGAC TGATTCCGCT TGGCAAGTTA TCCAAGAAAT CTTGGCTGAC
AAGCGTAAAC GAAAGTATTC ACTTCGTGCG ATTCTCAATG CATTACTGTA TTTGACCAAA
ACCGGTTGCC AGTGGCGACA GATGCCCAAT GATTTGCCGC CTTGGCCTTT GTGCTACTAC
TACTTCTGGA AGTGGCGTAA CGAGGGGACT TGGGAACGAC TCAACAAGTC GTTGGTCGAA
CGTAGACGAC AAAAAGCGAA ACGGGAAGCT TCACCCAGCG TGGGCGTCAT TGATTCACAG
AGCATTAAGT GTAGTGAGTG GGGTGTAGTG CCCAAAGGCT ATGATGGCCA TAAGAAGGTT
AACGGACGTA AGCGGCACAT CATCGTGGAT ACATTAGGCT TGGTTTTAGT AGTCGTAGTT
CATGCGGCTA ATCAACATGA CAGTCCAGCC GCCAGAGCGG TACTAACTCG GTTAGCTGGT
CAAGGTTACG AGCGAATGAA CAAGATTTTA GCCGATAGTG CGTATGGCAA GAAGTTAGCC
CGTTGGCTTA AAAGGTCTTA TGGGCTACTC TTGGAAGTGG TAAAGGTGAG CGAGTTAGCC
GGTTTTCAAG TCTTGCCCAT GCGCTGGAAA GTCGAGCGAA CGTTTGCCTG GATGAATTGG
TCGAGACGGC TTAGTAAAGA CTATGAATGT GGAGTCAATT CGCACGAATC GTTCGTGTAT
TTGTCCAACA TCAACCGGAT GCTCAAGCAT TTTTAA
|
|---|
| Protein sequence | MYPTDLTDSA WQVIQEILAD KRKRKYSLRA ILNALLYLTK TGCQWRQMPN DLPPWPLCYY
YFWKWRNEGT WERLNKSLVE RRRQKAKREA SPSVGVIDSQ SIKCSEWGVV PKGYDGHKKV
NGRKRHIIVD TLGLVLVVVV HAANQHDSPA ARAVLTRLAG QGYERMNKIL ADSAYGKKLA
RWLKRSYGLL LEVVKVSELA GFQVLPMRWK VERTFAWMNW SRRLSKDYEC GVNSHESFVY
LSNINRMLKH F
|
|---|
| |