| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3923 |
|---|
| Symbol | |
|---|
| ID | 8727681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 4705687 |
|---|
| End bp | 4707360 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | carboxyl-terminal protease |
|---|
| Protein accession | YP_003388712 |
|---|
| Protein GI | 284038782 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0829863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.226226 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTTCT CTAAACGACT CACCCTGTTA GCCTCCTCAG CCCTTGTAGC GGGTGGCATT
GGTTTCTTCT CGTTCAAGAC GGACGACCGC TTCTTCGAGA TCGCGCGCAA CCTGGACATC
TACGCCACGC TGTTTAAGGA ACTCAATCTC TATTATGTAG ATGAGGTAAA CCCGAACCGC
ATGGTTAAAA CCAGCATCGA CGCTATGCTG AAAGCCCTCG ACCCGTACAC GAACTTCTTC
GCCGAAGACG AGATCGAGGA TTACATGACC ATGACCACCG GCCGCTACAA CGGCATTGGG
GCGCTCATTG GCCAGCGGCA GGGCAAAAGC ATCGTGCTAA TGGTGTATGA AGGCACCCCC
GCCGAAAAAT CGGGGTTGCA AATCGGTGAT GAAGTGCTTA AGGTGGACGG TGTAGACCTG
AAAACCCGCA AAGACCGCGA TGGCGGACCA CTTGATCCGG GTAAACTCCT GAAAGGGCAG
AACAACACGG CCGTAAAACT GACCGTTAGT CGGTACGGAC AAAAAGCCCC GCTCGAACTC
AGCGTTATCC GGGATGTGGT TAAAATGACC AACGTGCCTT ACTACGGCAT GGTATCGGAC
GAAGTGGGAT ACATCGACCT CAAAGATTTT ACGGCCACGG CTTCGCGTGA GGTACGGACC
GCCTATCAGG AACTGAAGGG GAAAGGGATG AAAAAACTTA TCCTCGACGT TCGTGAAAAT
CCGGGCGGAC TGCTCAACAT GGCCATCGAC ATCTCGAATA TTTTTATTCC GAAAGATTCA
GAAGTGGTGA CGACTAAAGG TAAAGTGACG GAGTGGAACA AGACCTACAC CGCCATGAAC
CCACCCCTCG ACCTCGACAT TCCTATTGTT GTGCTGACAA ACAGCCACAG TGCATCGGCG
GCCGAGATTG TATCGGGGGT TATTCAGGAT TACGACCGGG GCGTGTTGAT CGGGCAGCGG
ACCTACGGCA AAGGGCTGGT GCAGACCACT CGGGAATTGT CGTTCAACAC CAAGCTAAAA
ATCACAACGG CCAAGTATTA CATTCCGAGT GGCCGGTGCA TTCAGGCCAT CGACTACAGC
CACCGCAACG CCGATGGCAG CGTGGGCAAG ATTCCGGATT CGCTGAAAAC CGCTTTCAAA
ACCAAGGCGG GCCGGGTAGT ATACGACGGC GGTGGCGTGT TGCCCGATAT TGTCGTAGAA
GCGCAGACAC CCTCGCCGGT GGCCCTGAGC CTGACAAACA AAGGCCTGAT TTTCGATTAT
GCCGTGAAGT ACCGACACGA GCATGCTAGC ATTAAACCAG CCCGCGAATT CCGCCTGACC
GATGCCGAGT ATACTGAATT TGCGAAGTGG CTCGGCGATA AAGAGTACGA TTATACGACG
CAGGTCGAGA AAGACTTGGG TACCCTCGAA GCATCGGCCA AGAAAGAGAA GTATTTCGAC
CAGATTCAGG ATCAACTGAA GTCGCTGAAG ACCAAAATGT CGCACAGCAA AGATGCCGAC
CTGAACACCT TCAAGCCAGA GTTAAAAACC CTGCTTGAGC AGGAAATAGC CGGGCATTAC
TACCTGCAAA AAGGCATCAA GGAAGCCTCG TTCGCTACCG ATCCCGAAAT GAAAGCAGCC
CTTGACCTGT TCAAAGACAT GAACCGGTAC GGTACCATCC TGAAGGGAAA GTAA
|
|---|
| Protein sequence | MRFSKRLTLL ASSALVAGGI GFFSFKTDDR FFEIARNLDI YATLFKELNL YYVDEVNPNR
MVKTSIDAML KALDPYTNFF AEDEIEDYMT MTTGRYNGIG ALIGQRQGKS IVLMVYEGTP
AEKSGLQIGD EVLKVDGVDL KTRKDRDGGP LDPGKLLKGQ NNTAVKLTVS RYGQKAPLEL
SVIRDVVKMT NVPYYGMVSD EVGYIDLKDF TATASREVRT AYQELKGKGM KKLILDVREN
PGGLLNMAID ISNIFIPKDS EVVTTKGKVT EWNKTYTAMN PPLDLDIPIV VLTNSHSASA
AEIVSGVIQD YDRGVLIGQR TYGKGLVQTT RELSFNTKLK ITTAKYYIPS GRCIQAIDYS
HRNADGSVGK IPDSLKTAFK TKAGRVVYDG GGVLPDIVVE AQTPSPVALS LTNKGLIFDY
AVKYRHEHAS IKPAREFRLT DAEYTEFAKW LGDKEYDYTT QVEKDLGTLE ASAKKEKYFD
QIQDQLKSLK TKMSHSKDAD LNTFKPELKT LLEQEIAGHY YLQKGIKEAS FATDPEMKAA
LDLFKDMNRY GTILKGK
|
|---|
| |