Gene Slin_3070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_3070 
Symbol 
ID8726822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp3720020 
End bp3721084 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content55% 
IMG OID 
Productbeta-Ig-H3/fasciclin 
Protein accessionYP_003387880 
Protein GI284037950 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0201984 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.916822 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACTTAT TCCCCGACAA CGTTATGAAA ATCAAGCAGA GTTTTAGCCT TTTAGCGCTG 
GGAACAACGC TACTTGCCGC ACCCGTCTGG GCGCAGACAA CACCTACTGG AGCCGCCACA
TCAACAACTT ATCCGCAGGG AGCTATAGCC ACCGATTCTA TGCCAGCCAA GCCTTCCCGC
GAGCAGAAAC GAGCCATGAA GCGAAATAAA AGAGCCACCA ACCAGAAAGC GGGTACCACG
GGTACGACCA CCAATACCTC CCCGCAGGAT GCGGCTTACC GGGAGAGTTC ATCTAGTATA
GGCACGGCGG TAAACAACAG TAATACGACC AACTACAACA GCAACAACGT TACCAATGCC
CCCACGGGTG CTGGTAGTAA CCCCAACGCC ATGGGCGCTT CGAACCCATC GCCCACCCCC
GCAGATCAGG TGAGTAACGG GCAAAATAAC AGCGCGGCCC GCAGTTCGTC GAGCAGTGCG
GGAGCCGCTT ATTCACCCAA TACGGGAGCT ACGGATTCCA ACGCGGGTAC TGCCGCAGCC
GTAGCAGGCG AAAAAAACAG TAAAGAGCCT GCGGTAAAAG CCGGTAGCAC CGAACGGAAC
ACCAGCATCG GTGACTTCGT GTCGTCGTCA CCCAATTTCA TTACCCTGCA AAATGCCCTG
CAATCGGCCA ATTTGTGGGA AACCCTGAAA GGCTCGGGGC CTTATACCAT TTTTGCTCCG
ACGAACAACG CCTTCAAGAA ACTCTCTTCA TCGGCGCAGG GGGCACTTCT GGATGGCAGC
AACCGGGAAG CCTTAAAACA GCTCCTCTCG TATCATGTGG TGGATGGCTC GCTGAATTCG
CAGGAACTGG CCCGCCAGGC AAAAGCCGGA AACGGGAAAG CACAGCTTAA AACACTGGCG
GGTGGTACAC TCACCGTACA GGAATCAAAC GGTCGACTGA CGGTTACCGA TGAGCAGGGG
CATACGGCCA CGGTAGAAGA TACCGGTAAT CGGCAGTCGA ACGGCATGAT TTACGGAATC
AGCAACGTGT TAATGCCAAA ATCGGGCGTG GAAGCCTTCA AATAA
 
Protein sequence
MHLFPDNVMK IKQSFSLLAL GTTLLAAPVW AQTTPTGAAT STTYPQGAIA TDSMPAKPSR 
EQKRAMKRNK RATNQKAGTT GTTTNTSPQD AAYRESSSSI GTAVNNSNTT NYNSNNVTNA
PTGAGSNPNA MGASNPSPTP ADQVSNGQNN SAARSSSSSA GAAYSPNTGA TDSNAGTAAA
VAGEKNSKEP AVKAGSTERN TSIGDFVSSS PNFITLQNAL QSANLWETLK GSGPYTIFAP
TNNAFKKLSS SAQGALLDGS NREALKQLLS YHVVDGSLNS QELARQAKAG NGKAQLKTLA
GGTLTVQESN GRLTVTDEQG HTATVEDTGN RQSNGMIYGI SNVLMPKSGV EAFK