Gene Slin_2378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_2378 
Symbol 
ID8726122 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp2867666 
End bp2870338 
Gene Length2673 bp 
Protein Length890 aa 
Translation table11 
GC content54% 
IMG OID 
Productalanyl-tRNA synthetase 
Protein accessionYP_003387197 
Protein GI284037267 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.188776 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTCCC ACGAAATACG TCGGCATTTC CTCGACTTCT TCCAATCTAA ACAACACCTG 
ATTGTTGCCT CGGCACCGCT GGTCGCCAAA AACGACCCGA CGCTGATGTT CAACAATTCG
GGAATGGCTC AATTTAAAGA TTTCTTTCTG GGCAACGGAA CGCCCCCGTC CAAGCGGGTG
GCCGATACCC AGAAATGCCT GCGCGTATCG GGTAAGCATA ACGATCTGGA AGATGTTGGG
TTCGATACCT ATCACCACAC CATGTTCGAA ATGCTGGGCA ACTGGTCGTT CGGCGATTAT
TTCAAGAAAG AAGCCATTAC CTGGGCGTGG GAGTTGCTGA CGGAGGTCTA TAAACTGCCC
AAAGACCGGC TGTATGTGTC GGTGTTTCAG GGCGATGCGA AAGATAATGT TCCCTTCGAT
CAGGAAGCGT TCGACCTCTG GAAACCCATC GTGGGCGAAG ACCGGATCAT TTACGGCAAC
AAAAAAGATA ACTTCTGGGA GATGGGTGAT ACGGGCCCAT GCGGTCCCTG CTCGGAGATT
CACGTCGACT TGCGCACGCC TGAGGAAATC GCCGAAAAAC CCGGTAAGGA ACTGGTCAAT
GCCGACCATC CGCAGGTTGT CGAAATCTGG AACCTCGTGT TCATGCAGTT TAACCGGAAA
GCCGATGGCT CGCTGGAAGC ACTACCCGCC CGCCACGTCG ATACGGGCAT GGGTTTTGAG
CGCCTGTGCA TGGCGATTCA GAATAAACGG TCAAACTACG ATACCGACGT ATTTACGGGC
ACCATTAAGG TAATCGAAGA GATTTCAGGT ATCAGCTATA CCGCCGGTAC CGGCATGACG
GACGTGGCCA TGCGCGTGAT TTCCGACCAT ATCCGGGCGG TATCCTTTGC CATTGCCGAC
GGGCTGGTAC CCTCCAATGC CAAAGCCGGT TACGTAATCC GGCGGATTCT GCGCCGGGCT
ATCCGGTACG GCTATTCGTA CCTGAACCTC GCCGAGCCGT TCATGACCAA ACTCGTGCCA
ACGCTGGCCA TGCAGTTTGC CGATGTATTC CCTGAACTCA CTGCTCAGCG CGATTTTGTT
GCTACCGTAA TTCGGGAAGA AGAGATTTCA TTTTTGCGAA CACTCGGAAC CGGACTGGGT
CGCCTTGACC AGATCATCGG CCAGCTAACG ACCGATGGCA AGACGGAGAT TCCCGGTGAA
ACGGTCTTTG AACTGAACGA TACCTTCGGC TTCCCCGCCG ATTTGACGGC TCTGATTGCC
CGCGAAAAGC GTCTGACGAT TGATGAAGCC GGTTTCCAGA AAGCCTTGCA GGAGCAAAAA
GCCCGGTCGC GGAAAGACGC GTCCTCGTCG GCCGGTGACT GGATTGACGT GAACGAAACC
GACCGCGTTG AGTTTGTTGG CTACGACCAG CCCGAAGCGT ACGCTCAGAT TGTAAAGTAT
CGTAAGATAC AAAACAAGCA GGGAACGCAG GTTCAGGTGG TGCTCGACAA GACGCCTTTC
TACGCTGAAT CAGGTGGTCA GATTGGCGAT ACCGGTACGC TTGAACTGTT TTCGGGTTCC
GACCAGATCG GTACACTGAC GGTACTGGAT ACAAAAAAAG AAAATGACCT GACCATCCAC
ATTGTTCAGG ACGTTACGGG TATCGATGAT CTGCTCACCG AAGCGGATTC GGTCTATGCC
GTAATTAACA CGACTCGCCG TGGTTTGACG AGCAGCAACC ACTCGGCTAC ACACCTGCTA
CATGCCGCCC TGCGCGATGT ACTCGGCACG CACGTAGGCC AGAAAGGGTC GTATGTTGGT
CCCGACGCGC TGCGTTTCGA CTTCTCGCAC TTCAGTAAAG TGACGGATGA ACAACTCGCT
GAAGTAGAGC GCATTGTGAA CGAGAAAATC CGAGAGGATA TCAAACTCGA CGAGAAGCGG
AACGTTCCCA TCGGTCAGGC TAAAGAATTA GGCGCAACAG CCTTGTTTGG TGAGAAATAT
GGCGATTTCG TACGGGTCAT CACCTTCGAC CCCAACTATT CCGTTGAACT CTGCGGGGGC
ACCCACGTAC CGGCAACTGG CCACATTGGC CTGTTCAAGT TCACGGGCGA AGGGTCGGTA
TCGACGGGTA TTCGTCGGGT CGAGGCCAAA ACATCCGCTG GTGCCGAAGC ATTGGTGAAT
GAGCAGATGG CCGTCGTTTC GGAGTTGAAG GAGTTGCTGA AAGCACCCAA AGACGTTGTG
AAAGCGGTGC AGTCGCTACT GGACGAACGG GCTGCTTTAC AAAAACAGGT TGAAGCCTTG
CAGAACGAGA AAGTTCAGCA GTTAAAAAAT CAGCTTCTGG ATAAAATTGA AACAGTGAAC
CACAACGGCG GACCGGGCTA TTCCCGCCTG GTGGAACGCG TGGAGGTGCC CAACGCCGAT
GCCCTTAAGC AACTGGCGTA CGACCTGAAG GCCAAAGTCG ATAATCTGGC CGTTGTACTG
GGTGCCGACA TCAACGGCAA ACCCCAACTA GCGGTTATGC TGCCTGATTC ACTCATTCAG
GACAAAAAAC TGAATGCCGG TCAGGTGGTG AAAGAGCTGG CGAAAAACAT CAAAGGTGGT
GGCGGTGGTC AACCCTTCTT CGCCACAGCG GGCGGCACCG ACCTATCGGG ATTGGATGCG
GCTCTGGCGC AGGGGAAGGA ATTACTGGGG TAA
 
Protein sequence
MTSHEIRRHF LDFFQSKQHL IVASAPLVAK NDPTLMFNNS GMAQFKDFFL GNGTPPSKRV 
ADTQKCLRVS GKHNDLEDVG FDTYHHTMFE MLGNWSFGDY FKKEAITWAW ELLTEVYKLP
KDRLYVSVFQ GDAKDNVPFD QEAFDLWKPI VGEDRIIYGN KKDNFWEMGD TGPCGPCSEI
HVDLRTPEEI AEKPGKELVN ADHPQVVEIW NLVFMQFNRK ADGSLEALPA RHVDTGMGFE
RLCMAIQNKR SNYDTDVFTG TIKVIEEISG ISYTAGTGMT DVAMRVISDH IRAVSFAIAD
GLVPSNAKAG YVIRRILRRA IRYGYSYLNL AEPFMTKLVP TLAMQFADVF PELTAQRDFV
ATVIREEEIS FLRTLGTGLG RLDQIIGQLT TDGKTEIPGE TVFELNDTFG FPADLTALIA
REKRLTIDEA GFQKALQEQK ARSRKDASSS AGDWIDVNET DRVEFVGYDQ PEAYAQIVKY
RKIQNKQGTQ VQVVLDKTPF YAESGGQIGD TGTLELFSGS DQIGTLTVLD TKKENDLTIH
IVQDVTGIDD LLTEADSVYA VINTTRRGLT SSNHSATHLL HAALRDVLGT HVGQKGSYVG
PDALRFDFSH FSKVTDEQLA EVERIVNEKI REDIKLDEKR NVPIGQAKEL GATALFGEKY
GDFVRVITFD PNYSVELCGG THVPATGHIG LFKFTGEGSV STGIRRVEAK TSAGAEALVN
EQMAVVSELK ELLKAPKDVV KAVQSLLDER AALQKQVEAL QNEKVQQLKN QLLDKIETVN
HNGGPGYSRL VERVEVPNAD ALKQLAYDLK AKVDNLAVVL GADINGKPQL AVMLPDSLIQ
DKKLNAGQVV KELAKNIKGG GGGQPFFATA GGTDLSGLDA ALAQGKELLG