| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1536 |
|---|
| Symbol | |
|---|
| ID | 8725270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 1854598 |
|---|
| End bp | 1855914 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | 3-carboxy-cis,cis-muconate cycloisomerase |
|---|
| Protein accession | YP_003386384 |
|---|
| Protein GI | 284036454 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0157227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.182398 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGT ATTCCAGCCT GTTTTATAGT CCAGATATGC AGTCGTTACT GTCTGAAGAA
ACAACGGTGG CGCATATGCT TCGGTTTGAA GCGGCATTGG CGACGGCTCA GGCAAATAAT
GGCCTCATCC CAACGCCTTC AGCCGAACGG ATTGCGGCTT GCTGTACTGT TGAGTTGCTG
GATTGGGAGC GGCTCAAAAA AGACATTGCC CTGAGTGGGA ATGCCGCGAT TCCGCTGGTC
AAACAACTTA CCGAAGTTGT CAGAAAGCGG GATGAAGAAG CCGCTGGATT TGTGCATCTG
GGTGCAACCA GCCAGGACGT GGTCGATACG GCAACCGTAT TGACCATCAA AAGTGTGCTC
GATTGGCTGG ACGACAAACT CTCGGCACTG GCTAATAGGC TGATTGCCCT GACGCAGGCG
CATCGCCAGA CCGTTATGAT CGGCCGGACG TTGTTGCAAC AGGCAAAACC CATCACCTTC
GGCCTGAAAA CGGCCTTGTG GCTGGACGGT CTCGGCCGCA GTCAGCAACG GCTGGCAGCT
TGTCGGCAAC GGGTGCTTGT GCTGCAACTG GCGGGGGCGG TGGGCAGCCG CAATGCGTCG
ATTCCAGATG CAGTGCATCA GGAGACCGCG AATTTATTAG GGCTGGAGTC TTCCGTTTCC
TGGCATACGC AGCGGGATAA CATAGCCGAA CTGGCCGCTG TGATGGGCAT TCTTTCGGGT
AGTCTGGCTA AGATAGCGAA CGATGTTATG CTGTTGATGC AGACCGAGAT TGCCGAAGTG
CTGGAAGGAA AAGCGGCTGG TAAAGGCAGC TCCAGTACGA TGCCGCACAA ACGCAACCCG
GTCACCACAA CGGCCATTCT GGCCAACGCC AATCGGGTGC CGAATTTAGT AGCCACAATG
CTGTCGGCCA TGCCGCAGGA ACACGAACGC TCCGCCGGGC GCTGGCATTC GGAGTGGGAC
GTACTCACCG ACATCATGCA GCTTACAGCC GGGTCTGTTG AACGCTCCTT GGAGTTGCTT
GATAATCTCG AAGTGGATTC GCAACGTATG CGACAAAACC TCGAACTGAC CAACGGCCTG
ATCTACGCCG AAACCATTTC GCTGGCGCTG GCTCCCAAAC TGGGGAAAGC CACCGCCCAT
GAACTGGTCG AAAAAGCGTG TGCGGTGGCT ATTGCGGAAC AGAAACACTT AAAAGACGTG
CTTCGGGAAC AAGCCATTGA TGTAGCTGAT CTGGACAAGC TTTTCAAGCC GGAAAACTCG
CTGGGGCAGG CGCTGGAGAT TATTGATTTT ATTCTGCACC GCTTTGTACA TTCATAG
|
|---|
| Protein sequence | MSLYSSLFYS PDMQSLLSEE TTVAHMLRFE AALATAQANN GLIPTPSAER IAACCTVELL
DWERLKKDIA LSGNAAIPLV KQLTEVVRKR DEEAAGFVHL GATSQDVVDT ATVLTIKSVL
DWLDDKLSAL ANRLIALTQA HRQTVMIGRT LLQQAKPITF GLKTALWLDG LGRSQQRLAA
CRQRVLVLQL AGAVGSRNAS IPDAVHQETA NLLGLESSVS WHTQRDNIAE LAAVMGILSG
SLAKIANDVM LLMQTEIAEV LEGKAAGKGS SSTMPHKRNP VTTTAILANA NRVPNLVATM
LSAMPQEHER SAGRWHSEWD VLTDIMQLTA GSVERSLELL DNLEVDSQRM RQNLELTNGL
IYAETISLAL APKLGKATAH ELVEKACAVA IAEQKHLKDV LREQAIDVAD LDKLFKPENS
LGQALEIIDF ILHRFVHS
|
|---|
| |