Gene Slin_1494 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSlin_1494 
Symbol 
ID8725228 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSpirosoma linguale DSM 74 
KingdomBacteria 
Replicon accessionNC_013730 
Strand
Start bp1808928 
End bp1810172 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content52% 
IMG OID 
ProductL-fucose transporter 
Protein accessionYP_003386343 
Protein GI284036413 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.289824 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGCAA CCCCTACCGC AGGCCAGTCA AAAGCGGCCT TTACTGAAAA CAAGTACCTT 
GTTACCCTCG TCTTTGTTAC ATCACTTTTC ATGTTTTGGG GGGTCGCCAT TACGATGGGC
GATGTGTTGA ACAAGCACTT CCAGCATGTG CTGAGCCTGA CTAAAACACA ATCGGCTTTT
GTTCAGTTTG CCATTTTCGG AGCCTACTTC GTTATGGGTA TCCCGGCGGG ACTGTTCATG
AAGCGGTTCG GTTATAAAAA CGGAGTATTG CTTGGTCTGG GCCTTTTCGC TACCGGTTCG
TTTCTGTTTG TTCCGGCTGC TGCCGCTGCT TCGTTCACGT ATTTCGGTAT TGCTCTCTTT
ATTTTAGGCT GCGGTATCTC GACCCTCGAA ACGGTAGCCC ACCCCTTTGT GGCCTCCCTC
GGCGACCAGC GGACCAGCGA CCAGCGTATC AACTTTGCTC AGGCATTTAA TGCGCTGGGT
GCCATTATCG GCCCCGCCAT CGGCTCGTAT TTCCTGCTGC GTAACAACAC GCCGGGCAGT
ACCGATCTTA CCTCGGTAAA AACCCTGTAC ATTGCCATTG GCAGTGTCAT TGCTACGATT
GCCATTCTTT TCTCGTTTGT AAAAGTACCC GCTTTAACAG ATCCTCACGC TACCGTTGCC
GATCCTGACG CGGCCAATGT TGATGTAGCC CCCGGCAAAT CGCTCTTTGA GCATAAACAC
TTCCGTTGGG CGGTTGCTGC CCAGTTTTTC AACGTAGCCG CACAGGGCGG TACATGGGCG
TTTTTTATTA ATTACGGTCA CGAGAAGATG GGTTTCTCCG ATGCAGTGGC CGGTAACTAC
ATGGTGCTAT TCATGGGCCT GATGCTGGCC GGACGGTTTG TGGGTACCTT CCTGATGCGC
GTCATTGCGC CCCATACCTT GCTGGCCATT TTTGCGGGTT GTAACATCCT CATGTGCCTT
ATCATTACAC AGAGTTTGGG CTGGCCGTCG TTCATCGCGC TCATGATGCT CAATTTCTTC
TTCAGCATTA TGTTTCCGAC CATCTTCAGC CTGGGCCTTA AAAACCTGGG TTCGCATACC
CAACAGGCGT CTTCATTCAT TTCGATGGGT GTTGTTGGCG GGGCCGTGTT CCCGTTCCTG
ATGGGTATGG CCGCTGAACA CGATGTGGCA AACGCCTATT ATTTGCCTAT TATCTGCTAC
GCCGTTATCC TCCTGTTTGG GGCTAAGTTC TACAAGGTGA GGTAG
 
Protein sequence
MQATPTAGQS KAAFTENKYL VTLVFVTSLF MFWGVAITMG DVLNKHFQHV LSLTKTQSAF 
VQFAIFGAYF VMGIPAGLFM KRFGYKNGVL LGLGLFATGS FLFVPAAAAA SFTYFGIALF
ILGCGISTLE TVAHPFVASL GDQRTSDQRI NFAQAFNALG AIIGPAIGSY FLLRNNTPGS
TDLTSVKTLY IAIGSVIATI AILFSFVKVP ALTDPHATVA DPDAANVDVA PGKSLFEHKH
FRWAVAAQFF NVAAQGGTWA FFINYGHEKM GFSDAVAGNY MVLFMGLMLA GRFVGTFLMR
VIAPHTLLAI FAGCNILMCL IITQSLGWPS FIALMMLNFF FSIMFPTIFS LGLKNLGSHT
QQASSFISMG VVGGAVFPFL MGMAAEHDVA NAYYLPIICY AVILLFGAKF YKVR