| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1406 |
|---|
| Symbol | |
|---|
| ID | 8725140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 1708212 |
|---|
| End bp | 1709015 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003386255 |
|---|
| Protein GI | 284036325 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0615665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.271714 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG TAATTTTAAT CACAGGCGCG TCGTCAGGTA TTGGTAAAGA AACCGCCAAA
AAGTTGATCA TAGAAGGGCA CAAGGTGTAT GTAGCCGCCC GGCGAATTGA TCAGATGCAG
GACCTTCAAC TGGCAGGAGG CATTGCCCTG CCACTGGATA TTACCAACGA GGAAAACATC
CAGCAGGTAG TCGACATCAT CATCGGGCGG GAAGGAAAAA TCGACGTCCT GTTCAACAAT
GCCGGGTACG CTATTTACGG GTCGGTCGAG GAGATTCCGA TTCAGGAGGC CCGACGGCAG
TTTGAGGTCA ATGTGTTTGG CCTGGCCAGT TTAACCCAGA AAGTTATCCC CTTTATGCGC
GAAGCCCGGT CCGGTACCAT TATCAACTCC TCCTCGATGG GCGGTAAAAT GTATACCCCG
ATGGGTGCCT GGTATCATGC GTCCAAGCAC GCCATCGAGG GCTGGAGTGA TTGCCTGCGT
CTGGAGTTAA GTCCGTTTAA TATCCATGTA GTGATCTTGG AACCCGGCCT TATTGCTACT
GAGTTTAGTG ATGTGATGAG TGGTCCAATG GTGGCCCGGT CCGGCAGCGG CCCGTATGCC
AACATCGTGA AAGGGGTAGC TAGCTCAGCC TCAATGGCCA TGTCGCCAGC GTCGGTGATT
GCGAAAACGG TGTCAACCAT CGTTGGGAGC CGAAAGCCTA AAACGCGTTA CCGGGTGGGT
AATCGGGCAA AGCCGATGGT CTGGATGCGG GTCAATCTGG GCGACCGACT GTTTGATAAA
ATCATTATGA GTCAAGTAAA ATAA
|
|---|
| Protein sequence | MSKVILITGA SSGIGKETAK KLIIEGHKVY VAARRIDQMQ DLQLAGGIAL PLDITNEENI
QQVVDIIIGR EGKIDVLFNN AGYAIYGSVE EIPIQEARRQ FEVNVFGLAS LTQKVIPFMR
EARSGTIINS SSMGGKMYTP MGAWYHASKH AIEGWSDCLR LELSPFNIHV VILEPGLIAT
EFSDVMSGPM VARSGSGPYA NIVKGVASSA SMAMSPASVI AKTVSTIVGS RKPKTRYRVG
NRAKPMVWMR VNLGDRLFDK IIMSQVK
|
|---|
| |