Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_1002 |
Symbol | |
ID | 8724732 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 1217109 |
End bp | 1218329 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | |
Product | glucose/galactose transporter |
Protein accession | YP_003385852 |
Protein GI | 284035922 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00935633 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.690968 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACCTA CTGCCCCGCC TAAAACCCAA AATTATACCG GCCCGTTGCT CATCATCGGT GCTCTTTTCT TCGTTTTTGG CTTCGTTACA TGGGTCAACA GCGTGTTGAT TGCTTTTTTT AAGCAGGCCT TCGATTTAAG TACGGTCGGT TCTAATCTGG TTGCCTTTGC CTTTTTCATT TCCTATACGC TGATGGCCAT TCCCTCGTCA GCCCTGTTAA AGCGAACGGG TTTTAAAAAT GGCATGTCGA TGGGACTACT CATCATGGCC GTTGGCACTA TCATTTTCGT ACCAGCTGCC AAAGCGGTTT CATACCCCCT GTTTCTGGTG GGTTTGTTTC TGATCGGTAT TGGCCTGACG GTACTGCAAA CGGCCTCGAA CCCATACGCT ACAATTTTAG GACCGCGCGA AAGTGCTGCC CAGCGGATCA GTTTCATGGG CGTTGCCAAC AAGCTGGCGG GTATATGTAG TCAGTTTATT TTCGGTGGCC TGCTGCTAAC AGGGGCCAAC GCCGTTTCGG GAGCGGCCAC ATTGGAAAAA GTAGTAACGC CGTATATGAT TCTCACTGGC GTATTAATCG TACTGGCGAT TTTGATTCGC TACTCAAACC TGCCCGAAGT ATCGGAAGAA CAGGACGACG CCCCGGCTGA ATTAACGGCA CGGACCAGCG TCGGCCAATT CCCGAATCTG GTGCTGGGCG TGGCAGCCAT CTTTTGCTAT GTGGGTGCCG AGGTTATTGC CGGTGATACC ATTATCAACT ATGGCAAGGC TATGGGCTTC ACCAATGATG AAGCCAAATA CTTTACGACC TATACCCTGT ATGGTTTGCT GGCCGGTTAC ATACTTGGCA TCGTAGCGAT TCCCAAATAC ATTTCGCAGC AAATGGCCCT GCGTGTTGGC TCTATTCTGG CCCTGATCTT AACCACGGGG GCTATCCTGA CCGATGGGTT CACATCTATC CTGTGTGTCG CTTTATTGGG TTTCGCTATT TCGCCGATGT GGCCCGCCAT CTGGCCCCTG GCGCTGAACC GACTGGGTAA GTTTACCAAA ATTGGTTCAG CATTGCTGAT TATGGGCATT TCGGGTGGTG CATTATTACC CTTGCTGCAT GGGTATTTGA CCGATACGAT TAGCGCTAAA ATGGCCTATG CGCTGCTTCT ACCCCTGTTT GGCTACATTC TTTATTACGC CGTATTGGGT CATAAGAAGA CTAACTGGTA A
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Protein sequence | MTPTAPPKTQ NYTGPLLIIG ALFFVFGFVT WVNSVLIAFF KQAFDLSTVG SNLVAFAFFI SYTLMAIPSS ALLKRTGFKN GMSMGLLIMA VGTIIFVPAA KAVSYPLFLV GLFLIGIGLT VLQTASNPYA TILGPRESAA QRISFMGVAN KLAGICSQFI FGGLLLTGAN AVSGAATLEK VVTPYMILTG VLIVLAILIR YSNLPEVSEE QDDAPAELTA RTSVGQFPNL VLGVAAIFCY VGAEVIAGDT IINYGKAMGF TNDEAKYFTT YTLYGLLAGY ILGIVAIPKY ISQQMALRVG SILALILTTG AILTDGFTSI LCVALLGFAI SPMWPAIWPL ALNRLGKFTK IGSALLIMGI SGGALLPLLH GYLTDTISAK MAYALLLPLF GYILYYAVLG HKKTNW
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