Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Slin_0440 |
Symbol | |
ID | 8724168 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Spirosoma linguale DSM 74 |
Kingdom | Bacteria |
Replicon accession | NC_013730 |
Strand | - |
Start bp | 546253 |
End bp | 547938 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | |
Product | RagB/SusD domain protein |
Protein accession | YP_003385303 |
Protein GI | 284035373 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00952484 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.789519 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCAA CTATTGCACA TAAATCACTC CGTACACTGG CTCTTGCCGC CCTGCTACTT AGCGGGCAGG CATGTAAGGA TGTGCTGAAG GAAACTGTAG TCTCGGCTAT TCCGAACGAT TACATCAATA CACCCAAAGG TTTCGAAGAT GCCAGTAAGG CCGCCTATTC ATCCCTGCGT AACTTCTACG CATCGGAGCG TGGGCTGACC ATGACCGAGT ATGGTACGGA TATTTACCAG GCCGGAGCGG ATGGAAGCTA CAAAGGGTTT CACTTTTACG ATACCCAGAT GAATAGCTTC GTTGATATCA TCCAGCAGGT TTGGGAAGAG CTATATCGGG GCATTAACAC CTGTAATGCT GTTATCGAGC GTGCACCGGC AGCTACCGTT ACGGATGCTG TAAAAAAACT GCGTGTAGCC GAAATGAAGT TTCTAAGGGC GCATTATTAC TTTATTCTGG TGCAGCAGTT TGGCGGTGTT GATCTACGCC TGAAAGAAAC CTTAGGGCCT ACGAAAGTAA CCAGCCGGGC TTCAGAAGCC GATATATATA AGCAAATCAC AACCGATCTT GAAGCAGCCA TCCCTGATCT AGACCCAAAG ATGCGCTCAT CTGACTATGG TCGGGCTACC AAAGCGGCCG CCGAACATTT ACTGGCACGT GTTTATCTGA CCAAAGCAAC GTCGTCGGCT AAAGCGTCTG ATGATTATGC CAAAGCGGCA ACCCTGGCCC AGAGTGTTAT TGCCAACTAC GGCTTTAAGC TTCTGCCTGA TTTTGCGAGT GTGTTTGCCC AGGGCAGTGG TGAAATCAAC GATGAGGTCA TCTTCTCCGT TCAGTACACC TCTGACCCGC TGACCAACAT GAACACGGCC AACACCAATA ACGGTGATGG TAACAAGCTA CACTTGTACT TTGGTATGCA GTACGATGTG CAGCCCGGTA TGAAACGGGA TATTGCCAAC GACCGCCCCT TCAAACGGCT TCGTCCAACA ATGTACCTGC TTGAAACCGT TTTCAAAGAT CGGGTAAATG ACTCCCGCTA CAAGAAAACC TTCAAGGATA CCTGGCTAAG CAACAACCCC GGTACGAACC TGAACACCTC GTTCGACAAC AGTAAGGCCA AGATGACGCT AAAAGCGGGT GATACGGCAA TTTACATTCC GGGTGTTGAG TGGTCACTGG CACAGCGGGC CGCCAAGCCT TATCAGGTTT TGGTACCCAG TGCTTACACA GCCGCTCTTT TCCCAACACT GCAGAAATTC CTTGACCCGC TCCGTCCTGA CCTGACCTAC GAACAGGGTA GCCGCGATTA CCTGGCGTTC CGCCTGGCCG AAACGTATTT GATCCTGGCC GAAGCTCAGC TGAAACAGGG TAAAACCACT GAAGCCGCAG CCGCTATTAA TGCCGTTCGT CGCCGGGCTG CGTGGCCGGG GAAAGAGTCC GCTATGGAAC TCCAGGCTAG CGACCTCACG ATGGAAACAA TCTACGAAGA GCGTGCCCGC GAATTAGCCG GTGAGCAAAC CCGTTGGATG GATCTAAAAC GCTGGGGAAT TCTGGTAGAG CGCGTAAAAA AATACAACCC AGACGGAGCT GTTAACGTAA AAGAAACGCA CAATCTGCGC CCAATTCCGC AAACGCAGAT TGACCGTACA GAAAATGCAG GGTTCGCACA GAATCCAGGG TTCTAA
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Protein sequence | MKSTIAHKSL RTLALAALLL SGQACKDVLK ETVVSAIPND YINTPKGFED ASKAAYSSLR NFYASERGLT MTEYGTDIYQ AGADGSYKGF HFYDTQMNSF VDIIQQVWEE LYRGINTCNA VIERAPAATV TDAVKKLRVA EMKFLRAHYY FILVQQFGGV DLRLKETLGP TKVTSRASEA DIYKQITTDL EAAIPDLDPK MRSSDYGRAT KAAAEHLLAR VYLTKATSSA KASDDYAKAA TLAQSVIANY GFKLLPDFAS VFAQGSGEIN DEVIFSVQYT SDPLTNMNTA NTNNGDGNKL HLYFGMQYDV QPGMKRDIAN DRPFKRLRPT MYLLETVFKD RVNDSRYKKT FKDTWLSNNP GTNLNTSFDN SKAKMTLKAG DTAIYIPGVE WSLAQRAAKP YQVLVPSAYT AALFPTLQKF LDPLRPDLTY EQGSRDYLAF RLAETYLILA EAQLKQGKTT EAAAAINAVR RRAAWPGKES AMELQASDLT METIYEERAR ELAGEQTRWM DLKRWGILVE RVKKYNPDGA VNVKETHNLR PIPQTQIDRT ENAGFAQNPG F
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