| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1344 |
|---|
| Symbol | |
|---|
| ID | 8709082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 1606408 |
|---|
| End bp | 1608192 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 646483429 |
|---|
| Product | trypsin |
|---|
| Protein accession | YP_003374526 |
|---|
| Protein GI | 283783772 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0379667 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACG ATATGTATGG TGCAAATCAG CAGGAATCCA ATGAAACTGC AAATAATGGA
TATTACGAGC AGCAGGAACA GCCGACGCAA CCAGCACAAC CAACGCAAAC AGCACAAACA
TATAGCCCAG CTCCTGAATT CGGAGCTTAC GGCCCAACAA ATAACGAAAA TGAAGTTGGT
ACAAACACTA CACAGTATCC AGCTAACAAT TACGCCGTAA ACCAAAATAA CGATGCGGAT
AATACAAATA TCAATAATGC TCCTACGCAA TACATTGGAT CACAAAATTA CTACGGAAAT
AATAATTTTA ACGGCTTCGG AAATCCGTAT AATTACGGCA CAGACAATAA TTCTTACCCA
AATAATGAAG TTGGCAATCA AACACCAGCG CAACAGAATT TTAACAATAA TGCAAGTAAC
GAAGAAAATG AAAATATAGC AAAAACAAGC ATTATTAGCA CAAATGCAGC AAATACAAAC
GACACAAACA AAAAAGGTAA CAAAAGAAAA ACAAAAAGCT CTTCGTCAAC TGCTTTTGTT
GCCATTTTAT CCTCCGCAAT TTCTGCAATA GTTTGCGTAG TTGTAGTTCT ATTTGTAATC
TCGCAAGGTC TTATTTCAAT TCCACAAAGC GGCTCTTTCG CAAACATCGG CTCTCATTCT
TCTGGCCCTG GGACCGCAGT AGTTAAAGGC GGACAATCTC CGGATTGGCA AGGAGTTGCA
AAAAATGTTT CCGGAGCCGT TGTTTCTATA CAAACTCGTT TAGAGAAAGG CATGGGGAAG
GGTTCTGGAG CAATTATTGA TTCAAAAGGT TATGTTGTAA CAAACAATCA CGTAATTGCT
AATGCAAAAG AAATTCAAGT AACCCTTTCT AATGGTCAAA TTTATTCAGC TACATTAGTC
GGAGCAGATA AAACTACTGA TTTGGCAGTA CTTAAATTAG ACAATTCACC AAATAATTTA
AAGACAGTCC AATTTGCAGA TTCTAATCTG CTTTCCGTTG GCGAACCGGT TATGGCAATC
GGAAATCCGC TTGGATATGA CGATACAGCT ACCACAGGCA TTGTTTCGGC TTTAAATCGT
CCAGTATCAG TTATGGACGA CCAAAGCCGC TCTGAAATTG TAACTAATGC AGTACAAATT
GATGCAGCTA TTAATCCAGG AAATTCAGGC GGCCCAACTT TTAACGCTGC CGGAAAGGTC
ATAGGTATTA ATTCTTCTAT TGCAGCGACA TCAGCTCAAG GGGAGACTAC AGGATCTATC
GGCATCGGCT TTGCAATTCC AGCAAATCTG GTGAAACGAG TAGTTACAGA AATTATTAAG
AATGGTTCTG TAAAGCACGT AGCACTAGGG ATCATGATTA AAAGCACAGC AGTTGAGTCC
GAAGGAATTA CTCGCGGAGG AGCTCAAATT GTTTCTGTCA ATCAAGGAAG CCCTGCTGAA
AAAGCCGGAC TCAAAGCCAA TGACACTATT GTTGCCTTTG ACGATAAGCC TGTATCCAAT
AATTACGCAC TCCTCGGGTA TGTGAGAGCA ACAGCGTTCA ATCAAAAAGC TACGCTCACA
ATAGTTCGTA ACGGCAACAC ACTTAAGTTG CAAGTTACAT TCAACCAAGA AGAAACTGCT
GTTAATGGCA CAAATAAGCA AGAAAAGAAA TTAAAGAAAA ACCAAAAGAA GCCTGGTAAA
AAACGCGGAA GTAACTCGTA CGATGGTGAC GATGACGATT TACAACAACG TGGAGATGAC
GATGGTGACG ATGGTGGAAT ATTTGATCCA TTCGGTTTCT GGTAA
|
|---|
| Protein sequence | MADDMYGANQ QESNETANNG YYEQQEQPTQ PAQPTQTAQT YSPAPEFGAY GPTNNENEVG
TNTTQYPANN YAVNQNNDAD NTNINNAPTQ YIGSQNYYGN NNFNGFGNPY NYGTDNNSYP
NNEVGNQTPA QQNFNNNASN EENENIAKTS IISTNAANTN DTNKKGNKRK TKSSSSTAFV
AILSSAISAI VCVVVVLFVI SQGLISIPQS GSFANIGSHS SGPGTAVVKG GQSPDWQGVA
KNVSGAVVSI QTRLEKGMGK GSGAIIDSKG YVVTNNHVIA NAKEIQVTLS NGQIYSATLV
GADKTTDLAV LKLDNSPNNL KTVQFADSNL LSVGEPVMAI GNPLGYDDTA TTGIVSALNR
PVSVMDDQSR SEIVTNAVQI DAAINPGNSG GPTFNAAGKV IGINSSIAAT SAQGETTGSI
GIGFAIPANL VKRVVTEIIK NGSVKHVALG IMIKSTAVES EGITRGGAQI VSVNQGSPAE
KAGLKANDTI VAFDDKPVSN NYALLGYVRA TAFNQKATLT IVRNGNTLKL QVTFNQEETA
VNGTNKQEKK LKKNQKKPGK KRGSNSYDGD DDDLQQRGDD DGDDGGIFDP FGFW
|
|---|
| |