| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1317 |
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| Symbol | |
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| ID | 8709041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1573710 |
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| End bp | 1575572 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 646483404 |
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| Product | alpha amylase, catalytic domain protein |
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| Protein accession | YP_003374505 |
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| Protein GI | 283783751 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTCTC GAGCGATGAA GTTTAGCGCA TTTATGCGTA GGATTTTATT TTTTATAGTT
TCATTTTTTA TTAGTGTAAT GTTACTTTTT AATTCATCTA CTTCTGCTTT TGCGAACACT
GCTCATAGTG TGCGACCATT GGAAGAAGGT GATGTTATTT ATCAAGTCTT AGTTGATAGA
TTTGCGGATG GTGATTCATC CAACAATGAT TTTGGTCATG GTGAATATAA CCCTAATGAT
TTAGGTTTTT ATCATGGTGG CGACTGGAAA GGTCTAACTA ATCATTTGGA CTATATAGCA
GGGTTGGGTG TTACTGCAAT TTGGATTTCT CCTGTGTCTG AACAAGAACC GTTGTCAAAA
GACGGTAAAG AAGCAAGCTA TCATGGTTAT TTCACTAAAG ATTTTGCAAC ACCAAATAAA
CATTTTGGTA GTAGAGCTGA TTTGCAAAGG CTTATTAATG AAGCTCATAA TCGTGGATTA
AAGATGATTC TCGATGTTGT GCCAAATCAC ACGTCAGACT ATCTTGATGC TTATGCTCGT
AAATATAATG GGGCATATCA TCCAGAAGGG TTTTTGAATA ATCCAGCATT TTATCATCAT
TTTGGTGATT GTAAATTCGA TAATACTGAA TCGCAGTCTG ATATAGAGCA ATGTGATCTT
GGTGGTTTAG ATGATCTTGA TCAGTCTAAT CCGCAAGTCT CTAAATATCT TATTAAGACA
TATAAAGATT GGATTGATAT GGGCTTTGAT GGAATGAGAG TAGATGCTGC TCGTTCTATC
CCGAAACCTT GGTTAAAGAA ATTTGAGAAA GAAGTTGGGG TTCCATCATT TGGAGAAATA
TTTGTTGGTG ATGTTGATTA TGTTGCTGAT TACCAAAACT ACGAATGGGG TGCATTAGAT
TTTCCTTATT TCTTCACTGT GCGTAGAACT TTTTCAGCAG ACACGGATAT GCGTGACTTA
GGGAAGCTAT TTTCGCAGGA TACGAAATAT AGGAATCCAA ACCAATTAGA GACATTTATT
GATAATCATG ACAGAGCAAG GTTTTTGACT TGGGCAAATG ATGATTATCA ACGTTTACGT
TCTGCCTTGT CGTTTATGAT GACTACCCGT GGTTTGCCAA TTATTTATTA TGGCACTGAA
CAGGCTGATG ACGGTAATGG CAATGGTTCA GAAGTCCCTA TTGCAAATAA GGATAATCGT
AAAGATATGA AATCGTTTAA CACTAAATCT CCGTTATACC AGCATATTAA ACGATTAACA
GAGATTCGTC GTAAGCACAC TTCATTGAGG ACAGGTCGTC AACTTGAGAT GTGGTCTGCC
AAAGATGTGT ATGCTTTCTC TCGTATGGCC AAGGATAATA GCGATGAGGT TATTACAGTT
GCTCATAATA CTTGGGGTGA AAAGATGGTT ACTATACCTC TTAGAGCAGA AAGTCATATC
TCTGTAGGAA CTGTTTTGAC AGATATGATG AATACGAATC GTAAGGCAAC TGTTGTGCCA
GGAGGAGTAA CCGGTAAACA GATTAAGGTG CTATTATCTT CGCATGATGT CGCTATTTTT
GCCGCAGAGA CGTCTACTTC TGAGTATCAC CCAGTTCGTC GGAATCTTAC GAAGATTATG
GTTCATGCGA ATGTTCCTTT AGGTCATTCG CTAACTGTAA GAGGAGATAC TTATCCACTT
TCTTGGAATT ATGGTCGTGC ATGTCATTAT TTGGGTAACG ACATATGGGA ATTTGAAATG
GAAAGAATAC CTAAAGGTAA AAAGTTCCAA TTTAAGGCAT TGCTTGATGA CAAACAATGG
GTGTCTAAAG ATAATGTCTT CGGAGTTGGA GGGGAGGAGG TAGAAACAAG CGTGCATTTT
TGA
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| Protein sequence | MNSRAMKFSA FMRRILFFIV SFFISVMLLF NSSTSAFANT AHSVRPLEEG DVIYQVLVDR
FADGDSSNND FGHGEYNPND LGFYHGGDWK GLTNHLDYIA GLGVTAIWIS PVSEQEPLSK
DGKEASYHGY FTKDFATPNK HFGSRADLQR LINEAHNRGL KMILDVVPNH TSDYLDAYAR
KYNGAYHPEG FLNNPAFYHH FGDCKFDNTE SQSDIEQCDL GGLDDLDQSN PQVSKYLIKT
YKDWIDMGFD GMRVDAARSI PKPWLKKFEK EVGVPSFGEI FVGDVDYVAD YQNYEWGALD
FPYFFTVRRT FSADTDMRDL GKLFSQDTKY RNPNQLETFI DNHDRARFLT WANDDYQRLR
SALSFMMTTR GLPIIYYGTE QADDGNGNGS EVPIANKDNR KDMKSFNTKS PLYQHIKRLT
EIRRKHTSLR TGRQLEMWSA KDVYAFSRMA KDNSDEVITV AHNTWGEKMV TIPLRAESHI
SVGTVLTDMM NTNRKATVVP GGVTGKQIKV LLSSHDVAIF AAETSTSEYH PVRRNLTKIM
VHANVPLGHS LTVRGDTYPL SWNYGRACHY LGNDIWEFEM ERIPKGKKFQ FKALLDDKQW
VSKDNVFGVG GEEVETSVHF
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