Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1290 |
Symbol | |
ID | 8709240 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1540639 |
End bp | 1541574 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646483377 |
Product | ABC transporter, permease protein |
Protein accession | YP_003374478 |
Protein GI | 283783724 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACAAG TAGATCAGAA ATCTCATTCA ACTCCTCTGA GGAAAAAATT TGGTGGTATA GCAAAAGTAA CCGCTGCGTT GTCTCGAACC TTCTCCTTTC GCAATGTGGC AGTGACATTT CTGGTTGCTT ATTTCGCGAT TTTCCTTGCC TATCCTATTT ATAAAGCGTT TGCCGGCAGC TTCCACGAGT GGAATCCGTT GGTTGGAACG TACAACTGGG TTGGGTTCGA TAATTTCAAG CAGATTTTAA CCGACGGTTT ATTCTGGAAG TCAATCGGGA ATACAGCTGT TTTCATGGCA ATATCCGTGA TTTTCCGCAT TGTTCTCGGT TTGGGTTTGG CAATGTTGCT CAGCTCCAAG CTCGTGCATT GCAAAGATTC GCTGCGTGGC CTATTTTATA TGCCAACGAT TACGCCACTT GTGGCAGTAA GCTTCGTGTG GATGTGGATG TTTGATCCGC AGTTTGGCAT GATTGATAAA GTCACTGGAT TGAATATTAA TTGGTTGCAC AGTTCTACTT GGGCTATGCC GGCAATTATT ATCATGACCA TTTGGAAAGA TTTTGGCTAC GCAACCGTGC TATATTTGGC AGGCTTAATG AACCTTCCCA AAGACGTGTA TGAAGCAGCC GATATTGATG GTGCTAACAG TGTGCAAAAA TTCTTCCGCA TTACTTTGCC GCTACTCAAA CCGACAACGT TATTTATTGT GATTACGTCA ATGATTGCTT ACCTGCAAGC CTACGTGCAG ATTTTGGTTA TGACTAACGG TGGCCCAGGA ACAGCAACTT ACACTATTAG CTACTTGATC TTTGATCAAG CCTTCCAAAA GTATAACTTT GGTATTGCGT CAGCCATGAG CGTAGTGCTT TTTATCTTTA CTGGCGTACT CACGATAATC ATGTTCAAAG CTTCTGAGGA CGGTGAGTTG GTATGA
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Protein sequence | MEQVDQKSHS TPLRKKFGGI AKVTAALSRT FSFRNVAVTF LVAYFAIFLA YPIYKAFAGS FHEWNPLVGT YNWVGFDNFK QILTDGLFWK SIGNTAVFMA ISVIFRIVLG LGLAMLLSSK LVHCKDSLRG LFYMPTITPL VAVSFVWMWM FDPQFGMIDK VTGLNINWLH SSTWAMPAII IMTIWKDFGY ATVLYLAGLM NLPKDVYEAA DIDGANSVQK FFRITLPLLK PTTLFIVITS MIAYLQAYVQ ILVMTNGGPG TATYTISYLI FDQAFQKYNF GIASAMSVVL FIFTGVLTII MFKASEDGEL V
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