| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1286 |
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| Symbol | thiO |
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| ID | 8709585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1535313 |
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| End bp | 1536383 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646483374 |
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| Product | glycine oxidase ThiO |
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| Protein accession | YP_003374475 |
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| Protein GI | 283783721 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR02352] glycine oxidase ThiO |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAATA TTCGTATTAT TGGTGCAGGT ATTATTGGTT TAGCAACAGC GTGGAGACTT
ACGGAAGCTG GCGTAAAAGT TAGCATAATT GATCCAGATC CAGTCTCGGG CGCTTCTCAC
CATGCTGCTG GCATGTTAGC TCCTACCGCA GAAATGCAAT ATCAGCAAGA AGCGTTGTAT
CCTCTTATGT TTGAGTCTGC AACTATGTAT AAGGAATTGG TTGATTCGGT TGCAAAGTAC
ACCGATAAGC CAACTGGCTA CTTAGAGTGC GGCTCTTACG TAATTGGCGG TGACGCTGCA
GATAACGAGC ACGTAAACGA GTTGCTAAAC TTGCAGCATC GTTACGGCCG TAGAGCTGAG
CATATTTCTG TGAGTAAGCT TCGTGAGATT GAGCCTGCTC TTTCGCCAAC TATTGCTGGC
GCTGTAAGCG TGCCGGACGA CCATCAAATC AACCCTCGTC TTTTCACTGC AGCAATGATT
GATGCACTCG AAAAGCGCGG TGTTGTTATT GAGCGTCGCG CAAGCACTCC AGACGATTTG
GGTCCAGACA CAGTTTTGGC ATCCGGCTTG GGTGCTAAGG ATATGCTTCC TCAGCTTAAG
CTTCGCGCTG TGTGGGGCGA TATGATTCGT ATGACTATTC CAGAGCCTTT GCGCCCAATT
TTGAGCTCTG TGGTTCGTGG ATTTGTGCAT GATCGTCCAG TTTATTTGGT TCCTCGCGCT
AAGGAAACAG GCGAGCTTGT GCTTGGCGCT ACTTCTCGCG AAGATGACCG CGATATTCCA
AAGGTTGGTG GCGTACTCGA CTTACTTCGC GATGCTGCAA GCGTGCTTCC TGGCATTCAG
GAATGCTCGA TTACTGAGGT TACCGCTGGC GGCCGCCCTG GAACTCCGGA CGATTTGCCA
TTCATTGGTA TTGATCCTAA GACGCATACC ACGATTTCCA CTGGTTACTT CCGTCACGGC
ATTTTGCTCA CCGCTTTGGG TTCTTCTTTG ACTACAAAGC TTGTGCTTGA GCAAGAATTG
ACCGAGAAGG AAAAGGGCTT CTTGGAAAGC TGCAATCCTG CTCGCTTTTA A
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| Protein sequence | MRNIRIIGAG IIGLATAWRL TEAGVKVSII DPDPVSGASH HAAGMLAPTA EMQYQQEALY
PLMFESATMY KELVDSVAKY TDKPTGYLEC GSYVIGGDAA DNEHVNELLN LQHRYGRRAE
HISVSKLREI EPALSPTIAG AVSVPDDHQI NPRLFTAAMI DALEKRGVVI ERRASTPDDL
GPDTVLASGL GAKDMLPQLK LRAVWGDMIR MTIPEPLRPI LSSVVRGFVH DRPVYLVPRA
KETGELVLGA TSREDDRDIP KVGGVLDLLR DAASVLPGIQ ECSITEVTAG GRPGTPDDLP
FIGIDPKTHT TISTGYFRHG ILLTALGSSL TTKLVLEQEL TEKEKGFLES CNPARF
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