Gene HMPREF0424_1276 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1276 
Symbol 
ID8710026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1524006 
End bp1525148 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content45% 
IMG OID646483364 
Productputative inositol 1-phosphate synthase 
Protein accessionYP_003374465 
Protein GI283783711 
COG category[I] Lipid transport and metabolism 
COG ID[COG1260] Myo-inositol-1-phosphate synthase 
TIGRFAM ID[TIGR03450] inositol 1-phosphate synthase, Actinobacterial type 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATCC GCGTTGCCAT TGCCGGTGTC GGCAATTGTG CTTCGTCGCT GGTTCAGGGC 
GTTGAATATT ACAAAAACGC TGATGACGGT GAGAAAATTC CAGGGTTGAT GCACGCTGTA 
TTTGGCCAGT ATCGTGTGCG CGATATTGAG TTTGTTACGG CGTTTGATGT TGATTCTCTA 
AAGGTTGGGC ATGATTTAAG TGAAGCAATT GGCGCTTCAC AAAATAACAC AATTCGTTTT 
GCTGATGTAC CAAATTTGGG TGTAGAAGTA TTGCGTGGTC CAACTTATGA CGGCTTAGGT 
GATTATTATC GCGAGATGAT TGACGAGTCC GAGGCTGAGC CTGTTGACGT AGCTCAAGTT 
TTGCGAGATA AGCATGTTGA TGTGCTTGTT TCTTATTTGC CAGTCGGCTC CGAAGAGGCA 
GATAAAGCCT ACGCAACATT TGCAATGGAA GCTGGATGCG CATTTGTAAA CTGTCTGCCA 
GTCTTCATTG CTTCTGATCC TGAGTGGGCG CAAAAATTCC GTGATGCTGG AGTTCCTATT 
ATTGGCGATG ACATTAAAAG TCAGGTAGGT GCAACTATTA CTCACCGCGT TATGGCTCGA 
CTTTTTGAGG ATCGCGGTGT GCGTTTGGAT CGCACGTATC AGCTGAATGT TGGTGGAAAC 
ATGGACTTTA TGAACATGCT TCAGCGTTCA AGACTTGAGT CTAAAAAGAT TTCTAAGACT 
CGTGCAGTAA CTTCAATCGT GCCTCATGAA ATGGATGAGC ATAATGTTCA TATTGGGCCT 
TCTGACTACG TAGCTTGGTT GGATGATCGC AAGTTTGCTT TCGTGCGTTT GGAAGGTACT 
ACTTTTGGTG ATGTTCCTTT GAATTTGGAG TACAAGCTTG AGGTTTGGGA TTCTCCAAAT 
TCTGCCGGAA TTGTTATCGA TGCTGTTCGA GCCGCAAAAA TTGCTTTGGA TCGCAAGCTT 
TCTGGTCCGG TTTTGGCTCC AAGTTCATAT TTTATGAAGT CTCCTGCAGT TCAGCATGAA 
GATAGTGAAG CTCGCCAATT AGTTGAACGC TATATTGCCG GTGATGTTGA AGCTAACGAG 
TCTCAGCTTG ATGAAGATAC TGAATTTGCA AAAGAGCATG GCAAGAGCGT GTGGCGCGCA 
TAA
 
Protein sequence
MSIRVAIAGV GNCASSLVQG VEYYKNADDG EKIPGLMHAV FGQYRVRDIE FVTAFDVDSL 
KVGHDLSEAI GASQNNTIRF ADVPNLGVEV LRGPTYDGLG DYYREMIDES EAEPVDVAQV 
LRDKHVDVLV SYLPVGSEEA DKAYATFAME AGCAFVNCLP VFIASDPEWA QKFRDAGVPI 
IGDDIKSQVG ATITHRVMAR LFEDRGVRLD RTYQLNVGGN MDFMNMLQRS RLESKKISKT 
RAVTSIVPHE MDEHNVHIGP SDYVAWLDDR KFAFVRLEGT TFGDVPLNLE YKLEVWDSPN 
SAGIVIDAVR AAKIALDRKL SGPVLAPSSY FMKSPAVQHE DSEARQLVER YIAGDVEANE 
SQLDEDTEFA KEHGKSVWRA