| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1249 |
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| Symbol | |
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| ID | 8709670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1490190 |
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| End bp | 1491986 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646483337 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003374439 |
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| Protein GI | 283783685 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00159778 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCACAAC GTAATACTTA TCGTGAAGAC GAAGCTCAAG AAGAACACAT AAATGTGCAC
GAGCTTATGC GCGTTAGAAA ATATATGAAG CCGTATGCTA CTAAACTTCT ATTCGTAATT
ATGGTAGTTA TTAGCGGCAG CATAATTATG ACAGCGATGC CAATGATTAC AAAAACGCTA
ATCGACGTTG TATTGCCTCA GAAAAACGTC AATTATTTAT ATACAATTAT TGCAGTATTT
GCAGTGCTCA TTATATTGTA TGAACTCGGT TTAGCATACA GAACTTTAGC GATTACACGC
ATCGGCCAGA TGATAATCAA AGACATGCGT CGCGATATTT TTACGCATGT GCAATCACTG
TCTTTTGATT ATTTTGATTC GCGTCCGCAT GGGAAAATTC TGATTCGCAT TGTAAACTAC
ATCAATACGC TTTCTGACAC GCTTTCATCC GGTTTAATTA ACGTATTTTC TGACGTTTTT
GTGCTTATTA TTACATTAAT AACAATGTTT GTTATAGATT GGCGAATGGC TTTGTGGAGC
TTGGCGCTAT TCCCAATATT TATAATTTGG ACGCGAACTT TACAAATTTT GCAAAGAAAA
GCGTCTAAAA AGTTATCAAA TAAACAAAGT AATTTAAATG CGTATTTGCA CGAATCAATC
GCAGGAGTAA AAACAACGCA AACTTTTGCG CGAGAAGCTA TGGCATACAC TACTTTTCAA
GAGCAACAAG CAGAAGTAAG AAGTGCTTGG ATGCGAAACG TTAGAGTGCA AATGTTACTT
TGGCCTGGTG CTTCAATTAT TGAGACTGCA GCAATAGCGC TTTTGTATTA CGCTGGCATA
GCAAACTTAG GTGCAATGAA CGTGAGCACG GGCACGCTTA TAGCATTTGT TTGGTATTCG
ACTACTTTCT GGGATCCAGT AGTAAATATT GGAAACTTCT ACACGCAACT TGTAACGTGC
TCAGTTTATT TGGAACGAAT TTTTGAAACT TTACGAATTA AGCCAAATAT TGTAGATAAG
CCAGATGCTA TTCAATTGCC TCAGATCGAA GGAAAAGTAG ACGTAAATGA CGTTGTTTTC
CGTTACGAAG AAGATGGAAG GCCAATATTG AACTTGGTTG ATTTGCATGT TAATCCTGGT
ACTACTGTAG CTCTTGTGGG GCCTACTGGC GCAGGAAAAA CAACTCTTGT AAGTCTTCTT
TCTAGATTCT ACGACGTTTC AGAAGGCTCG ATTACTATAG ACGGGTACGA TGTACGTTCA
GTAACGCTCG CATCTCTTAG AAAACAAATG GGCGTAATGT TGCAAGATAG CTTTATTTTC
AGTGGAACCG TACGCGAGAA CATCCGTTAT GGGAAGCTCG ATGCCACTGA TGAAGAAATT
GAGAATGCAG CGCGCGCAGT TCATGCTCAC GAATTTATTG AAGGATTACC GAACGGATAC
GATACTGAAA TTGAAGAGCG CGGAGCCACT CTTTCTGCAG GTCAGCGTCA GCTTATATCG
TTTGCGCGAG TATTGCTTGC GAATCCGCGA ATTCTTATTC TAGATGAGGC AACAAGTAAT
ATTGATACTC GTACAGAAGA AGCATTACAG GCAGGATTAG CTCAATTACT TAAAAATCGC
ACATCTTTTG TAATAGCGCA TAGGCTTTCG ACGATTGAGA ATGCGGATTT GATTTGTGTA
ATCGATCATG GAGAAATTGT TGAAAAAGGC ACTCATAACG AGCTTATGGA GGCAAGAGGA
GCGTATTATC GTCTTGTAAA ATCGCAATAT GATGCAATTC GCAAAGCAGT TTTATAA
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| Protein sequence | MAQRNTYRED EAQEEHINVH ELMRVRKYMK PYATKLLFVI MVVISGSIIM TAMPMITKTL
IDVVLPQKNV NYLYTIIAVF AVLIILYELG LAYRTLAITR IGQMIIKDMR RDIFTHVQSL
SFDYFDSRPH GKILIRIVNY INTLSDTLSS GLINVFSDVF VLIITLITMF VIDWRMALWS
LALFPIFIIW TRTLQILQRK ASKKLSNKQS NLNAYLHESI AGVKTTQTFA REAMAYTTFQ
EQQAEVRSAW MRNVRVQMLL WPGASIIETA AIALLYYAGI ANLGAMNVST GTLIAFVWYS
TTFWDPVVNI GNFYTQLVTC SVYLERIFET LRIKPNIVDK PDAIQLPQIE GKVDVNDVVF
RYEEDGRPIL NLVDLHVNPG TTVALVGPTG AGKTTLVSLL SRFYDVSEGS ITIDGYDVRS
VTLASLRKQM GVMLQDSFIF SGTVRENIRY GKLDATDEEI ENAARAVHAH EFIEGLPNGY
DTEIEERGAT LSAGQRQLIS FARVLLANPR ILILDEATSN IDTRTEEALQ AGLAQLLKNR
TSFVIAHRLS TIENADLICV IDHGEIVEKG THNELMEARG AYYRLVKSQY DAIRKAVL
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