| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1236 |
|---|
| Symbol | |
|---|
| ID | 8709364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1469284 |
|---|
| End bp | 1470147 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 646483324 |
|---|
| Product | anchored repeat-type ABC transporter, permease subunit |
|---|
| Protein accession | YP_003374429 |
|---|
| Protein GI | 283783675 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1108] ABC-type Mn2+/Zn2+ transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00000156655 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTATCTC CAATAGAATT TATACAAGAT TTAACAAATC CAGACCTTTG GTTTTTGCTA
AAAGCGCTTA TTGTAGCGTG CCTTTCTAGC GTAATTTGCG GTGTAGTTGG ATGCTACGTA
GTACTTAGAG GAATGGCGTT TATTGGAGAT GCTGTAGCTC ACTCAGTATT CCCAGGACTT
GCTATAGCCT TCGTATTGCA AGGAAATCTG CTATTTGGAG GAGCGCTCGC AGGAGTTGCA
ACTGCGCTAA TCGTATCTAT TTTTAGCCAA AATCGCAGGC TTCGCGAAGA CTCATTTATT
GGCGTATTTT TCGTATCTGC TTTCGCTCTT GGAATTGTGA TTATTTCTAA AGCATCTGGC
TACGCCGGCT CTTTGGAATC CTTCTTGTTT GGCTCGATTA CAGGTATTCC TGATTCAGAT
ATTGCTGTTG TTGCTTTTAC TGGTTTGATT ATTTTGGCTA TATTATGCAT GTTCCACAAA
GAGCTTGTGT GCGTATCGAT GGATCGAGAA ACTTCGCGCG CAATGGGATT GCCAGTTGCA
TGGTTAGATG GAATGTTGTA CGTGTTAGTG GCTATCGCTG TAGTTGTTTC CGTGCAAATT
ATTGGAAACG TGCTTGTGCT TGCTCTGCTT GTGACTCCTG CTGCAACTGC GCGACTGCTT
ACGGATAGGC TGCCAAGAAT GATGATTTTA GCTCCTGTTA TTGGGTGCGT TTCTTCGATT
GTTGGAATGT ATATTTCGTG GAGCTTTGAT ACAGCAACAG GCGGAACAAT TGTGCTCGTA
GCAACCGCTT TATTCGTGCT CGCTTGGGTG TGCTCTCCTA AACATGGGTT GATTGCAAAA
GTGGGTCGTA GCGTAGGTTT ATAG
|
|---|
| Protein sequence | MLSPIEFIQD LTNPDLWFLL KALIVACLSS VICGVVGCYV VLRGMAFIGD AVAHSVFPGL
AIAFVLQGNL LFGGALAGVA TALIVSIFSQ NRRLREDSFI GVFFVSAFAL GIVIISKASG
YAGSLESFLF GSITGIPDSD IAVVAFTGLI ILAILCMFHK ELVCVSMDRE TSRAMGLPVA
WLDGMLYVLV AIAVVVSVQI IGNVLVLALL VTPAATARLL TDRLPRMMIL APVIGCVSSI
VGMYISWSFD TATGGTIVLV ATALFVLAWV CSPKHGLIAK VGRSVGL
|
|---|
| |