| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1232 |
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| Symbol | |
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| ID | 8709581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1464952 |
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| End bp | 1465953 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483320 |
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| Product | CAAX amino terminal protease family protein |
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| Protein accession | YP_003374425 |
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| Protein GI | 283783671 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000020685 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAGATT TGCAAAATTC ATGGCGCGAC GACACTTATT TGTTAGCGCG CAAACGTCAA
GGAACTATTG GCATGTCTTT ATGCGTATTC CTCGTAGTTT GGATTGCTGT TGCCTATGTT
CTTGGAGTCC TTTCTTCACA GTTTGTGCCT AAGAGCATGC TAAGCGACTC TCTTAACACA
TTACTTGTGT CGGATATTTC GCAGTATTTA GTCGCTTTGC CAATCGCAAT GCTTATTATG
CGCACTGTTC CTGCGGCAAA AACCCGACAA TTCTCTATGA AATTTAGCCA ATTTGGCGGA
TTCTTTGCTG TGTGCATACC GATTATGTAC ATTGGTAATA TAGTTGGCGT TTTCCTAGCA
ACAGTTCTTA GCGGTGGCAA AGCAGAAAAT CGCGTATCAG ACACTATTGC AGCGGGAAAT
ATGTGGGAAA CCTTCATATT CGTGGTAATT CTTGCGCCAA TTGTGGAAGA ATGGCTTTTT
AGAAAACAGC TGCTTTCTCG TTTGCGCGCG TACGGAGAAA AGCGAGCTAT TGTATTTTCT
GCACTTGCTT TCGCGCTTTT CCATATGAAC ATTTTCCAAT TCTTCTACGC ATTTGGACTT
GGACTTGTTT TTGGCTACAT TTATATTCGT ACGTCCAAGT TGAGCTACAG CATATTTCTT
CATATGATTG TGAATTTCCA AGGAAGCATA GTTGCAATGT GGTTGGAAAA GCAGCTGGTT
GATGCAAGCG GAAATATGAT TAACGTAGAA AAGATGTCTC GTCAGGAATT AACTAGACTG
CCAACCGGTT TTATTCTAGC TGGAATTTAT GGGATGTTTA TGATTGCCAT GCTTATAGTA
GGCGTGGTTT TGCTAGTTCG CCGCCGCAAG TATCTTGTAT TCTTCAATGC TCCGCAAGAA
CTTCCGAATA AAGCTGGCAA CAAAGCATTG TACGGAGCTG TTGGAGTAAT AGCATTTTTG
ATTATTTCAA TACTTCTTAA TTTGCTAATG TTATTTGTGT AA
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| Protein sequence | MQDLQNSWRD DTYLLARKRQ GTIGMSLCVF LVVWIAVAYV LGVLSSQFVP KSMLSDSLNT
LLVSDISQYL VALPIAMLIM RTVPAAKTRQ FSMKFSQFGG FFAVCIPIMY IGNIVGVFLA
TVLSGGKAEN RVSDTIAAGN MWETFIFVVI LAPIVEEWLF RKQLLSRLRA YGEKRAIVFS
ALAFALFHMN IFQFFYAFGL GLVFGYIYIR TSKLSYSIFL HMIVNFQGSI VAMWLEKQLV
DASGNMINVE KMSRQELTRL PTGFILAGIY GMFMIAMLIV GVVLLVRRRK YLVFFNAPQE
LPNKAGNKAL YGAVGVIAFL IISILLNLLM LFV
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