Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1224 |
Symbol | |
ID | 8709213 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1454110 |
End bp | 1457391 |
Gene Length | 3282 bp |
Protein Length | 1093 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 646483312 |
Product | S1 RNA binding domain protein |
Protein accession | YP_003374417 |
Protein GI | 283783663 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000000769273 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCCCAGAA TAATAAGAGA ACGCTTCAAT GAATCTGAAG CTGAAAATAG TAGAACTGTG TCTAAAACCG CTACTTCTGC GGAAATGTCC GGAATAATGC AATCTACAGA TTTTGCGGAA AGTAATATAG CTGCCGGCGA TACTTTGCAG CAAAGCTCTG GCGTTACGCG TCGCCGTCGC GGTCGACGAG TTACTCGTGG TGCCGGTGCG GCTGGAGAAG CAATGGAACT AAAAGTTGAG GATTCTAGTA CGAAGGATTC TGAGCCGCAT GTTGTTAAAT CGCGCCCGAT AACTTCGCTC CTATTCCAGG AGCCAGTTCT TCCTAAGGTA GTGAACAATC GTAGTGAAGA AAACAGCAGT TCGCGTGATG ACTTGCGTGA CAACTCGCGT GATGTCTTGA ATGATGATTT GCGTGATGAT TTACGTGATA TTTCTCGCGG AAGGCGCGGT GGACGCAACA GCCGCGATAG CCGTGATAGT CGCGATAGTC ATGATAGCCG TGATAGTAGC GAACGCAAGT CACGTTCTGA AAGACGTGAG AATTCAAGCG AAATAAAGCG TGATAGTGGC AGAGGGAATA GTCGTGAAAC ATCGCGTGAA ACAAGTCATT CTATGTATTC TCAAGATTCT GGGTACGCTA AGAATTTTCA GGATTCGCAA GATGATCGCG ATGAAAAAAC TCGCAAAAGC CAGCGTTCTC GCCGTTCTCG CAGATTGAAT GCTGTTGAGC GACGTGCTGC AGCTGAAGTT GAGCAAATTG AAGAGGATCT TGCATACGAC AATATTGTTT ATGCTCCCAT TGATACGCGC ATCGATGAAA CTCTTGATAT TAGCGATATT TTATCTGCGG AAAATGCTTC AAATAGGCGT TCTAATCGTC GCAATATGTC GAATAACATC TCTAATGATG ATGACGCTCG AAATGAAAAT GGTGCAGTAG GCAGCAGAGA TGGTAGCAAT ATCAGAGATA ACAGAGATAG CCGCAATAGC AGTGACGAAG GCGATAACAG AGGTATAAAC GACGATTATA ATGCGAATAA TGGCAACGAT GACGATGAAA TAATGATTAC GCGTCGCCGT CGTCGCCGTC GTAGCTCTCG CGCTGATCGC AACGAAAGTC GCAACGAAAG CCGCGATTTT GACATCGATA TTTCTAATGA TATTGACGAT GACGCGAATT CTCGCACAAA ACGCGCAAGA ATAGATGAAG TTTCTCAAGA AGATCGCGAT TTAATTCCAG ATCCAGAAGA ACTTCGTGAG CAAGATGAGG AAGAAACTCT TTATACGCGT CGCCGTCGTC GCCGCCGTTC TAAATCCTCC GATGACGCAA ATTCCGCGTC TTCTCAGGAA GAGTCATCCG ACTACACTAA TGCGAACGAG GATGACTTAA CTTCTCGCCG CTCGCGCAAG CAGCAGTATA TAGACGAAAT TACGGATATT GAAGGCTCTA CGCGACTTGA GGCAAAGCGC CAACGACGTA GAGATAATAG ACGTGAGCGT AGCCGTCAGA ACCTTCTTAT GGAGCAAGAT TTCCTTGCTC GTCGCGAAAA TGTTGAACGA TTAATGGTTG TTCGTGAGCG CGATCGCCAC ACGCAAATTT CCGTTATTGA AGACAATATT CTTGTAGAAC ATTATGTTTC TGATATTCAA GAAGTTGCTA CTGTTGGAAA TATTTATCTT GGGCGCATTC AAAACGTGCT TCCAAGCATG GAAGCGGCAT TCGTAGATAT TGGTCAAGCC AGGAATGGCG TGCTTTATGC AGGCGAAGTT AATTGGGATA TGGCTCGTCT TGAAGGTCAG CCTCGTAGGA TTGAGCTTGC GTTTAAGTCT GGTGATCCTG TGCTTGTGCA GGTTACTAAG GATCCAATTG GGCATAAGGG TGCTCGATTG ACTTCGCAAG TAACTCTTGC AGGGCGTTTC TTAGTGCTTG TGCCATCTGG CGGCATGACC GGTGTGAGTC GCAAGCTTTC GGATCGAGAG CGCTCGCGTT TGCGTGCTAT TGTGTCGAAG ATTGCACCAA AAGATATGGG CGTTATTATT CGTACTGCTG CTGACGGCGC AAGCGAGGAG TCGATTGAAA AAGATTTAGA TTCGCTTGTT AAGCAGTGGG AGCGCATTGA AGCTAAGCGC GAAGAATACT TGCATGGAAA GCGCCCTAAG CTGTTACAGG GTGAGCCTGA TGTGGCAATT CGTGTTGTGC GCGATATTTT CAACGATGAC TTCCAAAAGC TTATTGTTGA AGGCGAGGGA GTGCGTCAGC GAATTGATGA ATATCTTGAG ATGATGGCTC CAGATTTGCG CAGCAAGGTT GAATATTGGG ATCCTGCTGA GCATGAAGGC AAGGACGTTT TCGATAAGTG GCAGATTGAT AGTCAACTTC GTAAGGGTAT GGAGCGTCAG GTTTATTTGC CGGCTGGTGG CTCTATCGTG ATTGACCGTA CGGAAGCAAT GACTACGATC GATGTGAATA CTGGACGATT TATTGGGCGT GGTAAGTCTT TGGAAGAAAC GGTTACTCGT TGTAATTTGG AGGCTTCTGA AGAGATTGCG CGCCAGCTTC GTTTGCGCGA TATTGGTGGC ATGGTCATGA TCGATTATGT CGATATGGTT ATGCCAGCGA ACCGCGATTT AGTTTTGCGT AGGCTTTTGG AATGCTTGGC TAGGGATCGC ACGAAGCATC AAGTTGCTGA AGTTACGTCT CTTGGTCTTG TGCAAATGAC GCGTAAACGC GTTGGTCAAG GCTTAGTTGA AGCGTTCTCT GAAGAGTGTC CAACGTGCAA GGGACGTGGG TTTATTTTGC ACGATGAGCC TACTGTTTCT TCGGAATATG CAGATCCTTA CGCGCTTAAG GGCGGAGATC CTTTTGTTAA AACAAACAAG TATGGTCACG GAAGCGCAAC GGAACAGCCT GCGCCTGTTA AGCAGCAGGG TTCTAGTGCG GAAGTGAGAG CTAAGTTAGC GCGTATAGCT GCCGCGTCTG TAATTACTGA CGCAGCTCAT AAATCTGAAG AAGAAACGCA GTATAGCAAT TTTTTGAATT CTGATGAAGA GTCTGTATCT TCTAAGGCGG ATGAAACTAG CGAAGTTGTG GATGCTGGCG AAACCGCGGA AACTAGTGAA GTGGATAAAA CTTCTGAAGA ATTAGTTGAA AATAATTTAG AGGATACTAC GCAAGAGATT GCTGAGTATA CTGCGGAGCA ACCTACGCAA GAAACTATGC AGGAAACTGC GCAAGATAAT ACGCAGGAAA TTATGCAAGA AACTACAGAA AGTGATGATT GA
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Protein sequence | MPRIIRERFN ESEAENSRTV SKTATSAEMS GIMQSTDFAE SNIAAGDTLQ QSSGVTRRRR GRRVTRGAGA AGEAMELKVE DSSTKDSEPH VVKSRPITSL LFQEPVLPKV VNNRSEENSS SRDDLRDNSR DVLNDDLRDD LRDISRGRRG GRNSRDSRDS RDSHDSRDSS ERKSRSERRE NSSEIKRDSG RGNSRETSRE TSHSMYSQDS GYAKNFQDSQ DDRDEKTRKS QRSRRSRRLN AVERRAAAEV EQIEEDLAYD NIVYAPIDTR IDETLDISDI LSAENASNRR SNRRNMSNNI SNDDDARNEN GAVGSRDGSN IRDNRDSRNS SDEGDNRGIN DDYNANNGND DDEIMITRRR RRRRSSRADR NESRNESRDF DIDISNDIDD DANSRTKRAR IDEVSQEDRD LIPDPEELRE QDEEETLYTR RRRRRRSKSS DDANSASSQE ESSDYTNANE DDLTSRRSRK QQYIDEITDI EGSTRLEAKR QRRRDNRRER SRQNLLMEQD FLARRENVER LMVVRERDRH TQISVIEDNI LVEHYVSDIQ EVATVGNIYL GRIQNVLPSM EAAFVDIGQA RNGVLYAGEV NWDMARLEGQ PRRIELAFKS GDPVLVQVTK DPIGHKGARL TSQVTLAGRF LVLVPSGGMT GVSRKLSDRE RSRLRAIVSK IAPKDMGVII RTAADGASEE SIEKDLDSLV KQWERIEAKR EEYLHGKRPK LLQGEPDVAI RVVRDIFNDD FQKLIVEGEG VRQRIDEYLE MMAPDLRSKV EYWDPAEHEG KDVFDKWQID SQLRKGMERQ VYLPAGGSIV IDRTEAMTTI DVNTGRFIGR GKSLEETVTR CNLEASEEIA RQLRLRDIGG MVMIDYVDMV MPANRDLVLR RLLECLARDR TKHQVAEVTS LGLVQMTRKR VGQGLVEAFS EECPTCKGRG FILHDEPTVS SEYADPYALK GGDPFVKTNK YGHGSATEQP APVKQQGSSA EVRAKLARIA AASVITDAAH KSEEETQYSN FLNSDEESVS SKADETSEVV DAGETAETSE VDKTSEELVE NNLEDTTQEI AEYTAEQPTQ ETMQETAQDN TQEIMQETTE SDD
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